Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_2504 |
Symbol | |
ID | 5387184 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 2833254 |
End bp | 2835602 |
Gene Length | 2349 bp |
Protein Length | 782 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640865494 |
Product | Rhs element Vgr protein |
Protein accession | YP_001401472 |
Protein GI | 153948683 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria [COG4253] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATACCT TTCTCCCGAC TCTTCGGTTT GACCATAGCC ACCACAAACT GGTGGTCCGC GACAGCACCG CCGCCGTTGA TGTGCTGGGC TTTGAAGGCC ATGAAAGCCT GAGCCAGCCG TTCTGTTACG ACATCCAATT CACCAGCGCC GACAAGGCGA TTGACCCGGC CACCATGTTG ATGCAGGACG CGTCACTGAC ATTGGCGGCC CCGGTGGCTG AAGCCTTTGG TGTGACGGTT CAGCAGACCC AACGGGTGAT CCAAGGGGTG GTGACCGGGT TTAAACGTCT GTCGGCCTCG AAAGAGGAAT GCCGCTACGA ACTGAGCCTG CAACCGCGCC TGGCCTTGCT GTCGCGCAGC CATCAGAACG GGATATATCA GGACATGTCG GTGCCGCAGA TTGTGGAAAA AATTCTGCGT GAGCGCCATG ATATGCGCGG TCAGGATTTT GTCTTCACCC TGGCCCGCGA GTACCCGCGC CGCGAGCAGG TGATGCAGTA CGGCGAAGAT GACCTGACCT TTATCCGCCG CCTGCTGGCG GAAGTGGGGA TCTGGTTTCG TTTTACCGCC GATCCCAAAC TCAATATTGA TGTGGTGGAG TTTTACGACG ACCAGCGCTT TTACCCGTCA GGGCTGACGC TACAGGCAGT GCCCCCTTCG GGCCTGCACG ACAGCGGGAC GGAGTCGGTC TGGGATTTGT CCAGTGCCCA TCAGGTGGTG GAAAAATCGG TCAGTACCGG CGATTACAAC TACCGCACCG CCACTGCCGA CCTGACCGCC GGGGCCGACA TCACGCGCGG CGATACCACC ACCTACGGCG AAGCCTATCA TTACGCCGAT AACTATCTGA CCGCAGGCAG CGAAGGGCGC GAGCCGGAAA GTGAAAGTGG GGCCTTTTAT GCCCGTCTGC GCCATGAACG TTACCTCAAT AATCAGGCGC GCTTCGCCGG GGTGGCCAAT GCGGCGGCAC TGGCACCGGG TCAGGAACTG AACGTCACCG GCAACGACGT GCCAGCACAG TTTGGTAAAG GGGTGATAAT CACCCGCATC ACCAGCCATG CCCGCCGCGA CCGCAGCTAT GAAGTACATT TTGAAGCCAT TCCTTACTCC GAGGATTATT GCTTCCGTCC GGCGCTGATC CGCAAGCCGA CCATGGCCGG GACCTTGCCG GCGCGGGTGA CCAGTACCAC TGCTAACGAC ACTTATGGTC ATATCGACAA AGACGGGCGC TACCGTGTCA ACCTGATGTT CGACCGTGAC AGTTGGGAGT CGGGTTACGA AAGCCTTTGG GTTCGTCAGG CCCGCCCGTA TGCGGGTGAC ACCTACGGCC TGCACCTGCC GCTGCTGGCG GGCACCGAAG TGGCGATTGC GTTTGAAGAT GGCAATCCGG ACCGGCCGTA TATTGCCTCT GTGTTGCACG ACTCGGCGCA CGGCGACCAT GTCACCATCA GTAATTACAA ACGTAACGTA CTGCGTACTC CGTCGAATAA CAAACTGCGC CTTGAAGATG AACGGGGTAA AGAGCACATC AAGCTCAGCA CCGAATACGG CGGCAAAAGC CAGTTGAATC TGGGGCATCT GGTCGATAAC GAGAAACAGC CTCGGGGTGA GGGTTTTGAG CTGCGCACCG ACAGTTTTGG TGCCTTGCGG GCAGAAAAAG GGATTTTCAT CAGCGCTGAC GGCCAGGCGA AGGCACAGGG GCAGGTGCTG GAGATGCAAC CGGCTATCAG CCTGTTGAAA AGTGCGCAGG AACAGATGGA GGCCATCTCC GCGGATGCAC AAACCGCCAC CGCCAGTCCG GCCAACCTAC AGGTACAAAT CAGTCTGTTG CAGCAAAACC TCACTGAACT GAAACAAGCT GTCCTGTTAC TGAGTGCGCC AAAGGGGATC GCGTTGAGCA GCGGGGAGCA TCTGCAAATG AGTACCAGCG ATAACCTGAT TGCCACCGCA GGTAAAAATA CCGACGTCAG CGTCGCGAAA AACTTCTTTA TCGGCGTAGG CAATACCCTA AGTATCTTCG TCAGAAAGCT GGGGATGAAA CTAATAGCCA ATCAGGGGTC GATAACAGTC CAGGCCCAGA ATGATCTAAT GGAGTTATTG GCGCGTAAAG CGATCACGAT CACCAGCACC GAGGATGAGA TAAAAATCAC CGCCAAGAAG AGGATCACGC TGAATGCGGG AGGCAGTTAT ATCACGCTGG ATGAGAATCG GATCGAGTCA GGAACGGCGG GGGAATATTT GACCAAAGCA GGGTATTACG GGCGGTTAGA TAAGGCCAAG CTCCCAACTG AATTTCCAGC CTTAGCCGCT AAAACTGAAG ACCCCATTAA ACGTTGGCTA TTCTCTTAA
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Protein sequence | MNTFLPTLRF DHSHHKLVVR DSTAAVDVLG FEGHESLSQP FCYDIQFTSA DKAIDPATML MQDASLTLAA PVAEAFGVTV QQTQRVIQGV VTGFKRLSAS KEECRYELSL QPRLALLSRS HQNGIYQDMS VPQIVEKILR ERHDMRGQDF VFTLAREYPR REQVMQYGED DLTFIRRLLA EVGIWFRFTA DPKLNIDVVE FYDDQRFYPS GLTLQAVPPS GLHDSGTESV WDLSSAHQVV EKSVSTGDYN YRTATADLTA GADITRGDTT TYGEAYHYAD NYLTAGSEGR EPESESGAFY ARLRHERYLN NQARFAGVAN AAALAPGQEL NVTGNDVPAQ FGKGVIITRI TSHARRDRSY EVHFEAIPYS EDYCFRPALI RKPTMAGTLP ARVTSTTAND TYGHIDKDGR YRVNLMFDRD SWESGYESLW VRQARPYAGD TYGLHLPLLA GTEVAIAFED GNPDRPYIAS VLHDSAHGDH VTISNYKRNV LRTPSNNKLR LEDERGKEHI KLSTEYGGKS QLNLGHLVDN EKQPRGEGFE LRTDSFGALR AEKGIFISAD GQAKAQGQVL EMQPAISLLK SAQEQMEAIS ADAQTATASP ANLQVQISLL QQNLTELKQA VLLLSAPKGI ALSSGEHLQM STSDNLIATA GKNTDVSVAK NFFIGVGNTL SIFVRKLGMK LIANQGSITV QAQNDLMELL ARKAITITST EDEIKITAKK RITLNAGGSY ITLDENRIES GTAGEYLTKA GYYGRLDKAK LPTEFPALAA KTEDPIKRWL FS
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