Gene YpsIP31758_2400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_2400 
Symbol 
ID5386111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand+ 
Start bp2701107 
End bp2701613 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content46% 
IMG OID640865390 
ProductTRAP transporter, DctQ-like membrane protein 
Protein accessionYP_001401369 
Protein GI153949652 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.000000887899 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTCGTT ATTATCTCTC TGCGATGGAT GTTTTATACC GCCTATCAAT CTGGGTAGCC 
GGTATCGCTT TAATTATTAT GGTTGCCGCT ATCCCTATCG GTATATTTGC CCGTTATATT 
CAAAACGACG GCTTATCTTG GCCAGAACCC GTTGCTATTT TATGTATGGT GACGTTCACC 
TTTATTGGCG CAGCGGCCAG TTATCGCTCT GGTTCTCATA TTGCCGTGAG CATGGTAACC 
GATAGAATTC CCGAGGCGGG TAAGAAGATC TGTGCGTTGC TGGTTAATTT GCTGATGGTG 
ATGATAAGTC TATTTATTCT GAGCTACAGC TATATTCTGT GCAGCGAATT ATGGTCGCAA 
CCCGTCGCCG AGTTCCCATT ATTGACCGCC GGACAAACCT ATCTTCCTTT ACCTGTCGGT 
TCTGCTATTA CCCTGATGTT TATTATCGAG CGCCTATTTT TTGGCCCGCA AACCCAGCGC 
CCGGTAGTGA TGATCGGCAA TTCATAA
 
Protein sequence
MARYYLSAMD VLYRLSIWVA GIALIIMVAA IPIGIFARYI QNDGLSWPEP VAILCMVTFT 
FIGAAASYRS GSHIAVSMVT DRIPEAGKKI CALLVNLLMV MISLFILSYS YILCSELWSQ 
PVAEFPLLTA GQTYLPLPVG SAITLMFIIE RLFFGPQTQR PVVMIGNS