Gene YpsIP31758_2366 details

Gene Information

• Locus tag: YpsIP31758_2366
• Symbol: hpaR
• ID: 5384928
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis IP 31758
• Kingdom: Bacteria
• Replicon accession: NC_009708
• Strand: +
• Start bp: 2665650
• End bp: 2666117
• Gene Length: 468 bp
• Protein Length: 155 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640865355
• Product: homoprotocatechuate degradation operon regulator, HpaR
• Protein accession: YP_001401335
• Protein GI: 153947535
• COG category: [K] Transcription
• COG ID: [COG1846] Transcriptional regulators
• TIGRFAM ID: [TIGR02337] homoprotocatechuate degradation operon regulator, HpaR

Plasmid Coverage information

• Num covering plasmid clones: 39
• Plasmid unclonability p-value: 0.738628
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATGAAT CACTGACCAT CGCATTATTG CAGGCTCGTG AAGCCGCTAT GGCTTTTTTT 
CGGCCTATCT TGAAAGCCAA TCATCTGACT GAGCAGCAAT GGCGGATCAT TCGAGTGCTC 
GCGGATAATC GCTCAATTGA TTTTCATGGG CTGGCCCGCC AAACCTGTAT TTTACGTCCA 
AGCCTAACGG GGATTTTGAC GCGAATGGAG CGTAACAATT TGATTTTTCG CCTCAAACCC 
GTCAACGATC AGCGCAAACT TTATGTCTCC TTAACTCAGG AGGGACAAAA TTTGTATGAC 
AACGCTCGGC CACAGGTTGA AGAAGGTTAC AGGCTAATTG AGGCAGCATT TTCACCAGAT 
AAAATGGCGC AACTCTCTTT ACTGCTGGAT GAATTCATTA CCGTGGGTAA TAAACATCGG 
CAAGCGAATG AGATGTCAGA AAATGAGATG TTAGAAGATG AAGAGTGA 

 

Protein sequence

MHESLTIALL QAREAAMAFF RPILKANHLT EQQWRIIRVL ADNRSIDFHG LARQTCILRP 
SLTGILTRME RNNLIFRLKP VNDQRKLYVS LTQEGQNLYD NARPQVEEGY RLIEAAFSPD 
KMAQLSLLLD EFITVGNKHR QANEMSENEM LEDEE