| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_2062 |
|---|
| Symbol | kdsA |
|---|
| ID | 5387366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis IP 31758 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009708 |
|---|
| Strand | - |
|---|
| Start bp | 2377494 |
|---|
| End bp | 2378348 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640865048 |
|---|
| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
|---|
| Protein accession | YP_001401035 |
|---|
| Protein GI | 153950173 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.00175752 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGA AAGTGGTTAG CATTGGCGAT ATCAACGTAG CGAACGACCT GCCTTTCGTG
CTGTTTGGTG GTATGAATGT GCTTGAGTCA CGCGATCTGG CGATGCGCAT CTGCGAGCAT
TACGTGACGG TGACTCAAAA GCTCGGCATC CCTTACGTAT TTAAAGCCTC GTTCGACAAA
GCCAACCGTT CTTCAATTCA TTCTTACCGC GGCCCAGGCC TGGAAGAAGG GATGAAAATC
TTTCAAGAGC TGAAGCAACA GTTTGGCGTT AAAGTGATCA CCGATGTGCA TGAAGCCAGC
CAGGCACAGC CAGTATCTGA AGTGGTTGAT GTTATCCAGT TGCCTGCATT CTTGGCGCGT
CAAACAGATT TGGTCGAGGC GATGGCCCGT ACCGGTGCTG TCATCAACGT GAAAAAACCT
CAGTTCGTTA GCCCCGGTCA GATGGGCAAT ATCGTTGAGA AATTTAAAGA AGCGGGTAAC
GACCAGGTGA TCCTCTGTGA TCGCGGCAGT AACTTTGGTT ATGACAATCT GGTGGTTGAT
ATGTTGGGTA TCAATGTGAT GGTACAAGCA ACAGGCGGTC ACCCGGTTAT TTTCGATGTG
ACTCATGCGT TACAATGCCG TGACCCGTTT GGCGCGGCAT CTGGTGGCCG TCGTGCTCAG
GTCGCTGAAC TGGCCCGCGC AGGTATGGCG GTTGGTTTGG CAGGGCTATT TATCGAAGCA
CATCCAGAGC CGAATAGCGC GAAATGTGAT GGTCCATCAG CACTACCACT GGATAAGTTG
GAGCCATTCT TAGTGCAGAT GAAGGCTATC GATGATTTGG TGAAGAGTTT CCCTGCGCTG
GATACCAGTA AGTAA
|
|---|
| Protein sequence | MKQKVVSIGD INVANDLPFV LFGGMNVLES RDLAMRICEH YVTVTQKLGI PYVFKASFDK
ANRSSIHSYR GPGLEEGMKI FQELKQQFGV KVITDVHEAS QAQPVSEVVD VIQLPAFLAR
QTDLVEAMAR TGAVINVKKP QFVSPGQMGN IVEKFKEAGN DQVILCDRGS NFGYDNLVVD
MLGINVMVQA TGGHPVIFDV THALQCRDPF GAASGGRRAQ VAELARAGMA VGLAGLFIEA
HPEPNSAKCD GPSALPLDKL EPFLVQMKAI DDLVKSFPAL DTSK
|
|---|
| |