| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1923 |
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| Symbol | topA |
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| ID | 5386391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 2226590 |
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| End bp | 2229205 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640864907 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001400898 |
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| Protein GI | 153947176 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0924763 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAG CTCTCGTAAT AGTTGAGTCC CCGGCAAAAG CCAAAACTAT TAATAAATAC
TTAGGGAATG ATTACGTGGT TAAGTCCAGC GTCGGTCACA TTCGTGATTT GCCGACCAGT
GGCTCAGCCA GTAAAAAGAG CGCTAACTCA GCTGAAGAAA AAGCCAAAAA AGACGATAAA
CCCAAAAAGA AAGTGAAGAA AGACGAAAAG GTTGCCTTAG TCAACCGTAT GGGGGTCGAT
CCTTATCATG GCTGGAAAGC GCAGTATGAA ATTTTGCCTG GCAAAGAGAA AGTGGTTGCC
GAGCTGAAAG CATTAGCAGA AAACGCGGAT CATATCTATC TCGCAACCGA CCTTGATCGC
GAAGGTGAGG CTATTGCCTG GCATTTGCGG GAAGTGATCG GTGGGGACGA TAAACGTTTT
AGCCGCGTTG TCTTTAACGA AATCACCAAG AATGCGATTC AGCAGGCGTT TAATCAGCCT
GGTGAACTGA ACATCAGCCG TGTAAATGCA CAACAAGCCC GGCGTTTTAT GGATCGGGTT
GTTGGCTATA TGGTCTCTCC ACTGTTGTGG AAGAAAATTG CCCGTGGCCT GTCAGCTGGC
CGTGTACAGT CAGTTGCTGT GCGCCTTGTG GTTGAACGTG AAAAAGAGAT TAAAGCATTC
GTTCCTGAAG AATATTGGGA GCTACATGCA GATTTAGTGG CTAAAGGTGA CATTCCGATT
CAAATGGAAG TCACTCATGC CCATGGCAAG CCATTTAAAC CGGTAAATCG TGAGCAAACA
CATGCAGCGC TGACGTTACT GGAAAATGCC CGTTATAAGG TGTTGGATCG TGAAGATAAA
CCGACCAGCA GTAAGCCCAG CGCACCCTTC ATTACCTCCA CCTTACAGCA GGCGGCAAGT
ACCCGTCTGA GTTTTGGTGT GAAAAAAACC ATGATGATGG CACAGCGCCT GTATGAAGCG
GGTCATATCA CCTACATGCG TACCGACTCG ACTAATTTGA GTCAGGATGC ATTGACGATG
GTACGTGGTT ATATCGGCGA TAATTTTGGT GATAAGTATC TGCCTGCAAC GCCTAACCAA
TACAGCAGCA AAGAGAATTC GCAGGAAGCG CATGAGGCCA TCCGCCCTTC AGATGTCAAT
GTGTTAGCTG AGCAGTTGAA AGATATGGAA GCGGATGCCC AGAGGTTGTA CCAATTGATT
TGGCGTCAGT TTGTGGCGTG CCAGATGCCT CCGGCCAAGT ATGACTCGAC CACACTGACA
GTGCAGGCGG GGGATTTCCA ACTGCGCGCC AAAGGCCGCA CATTGCGCTT TGATGGTTGG
ACCAAGGTTA TGCCTGCGCT GCGTAAAGGT GATGAAGATC GCACCTTGCC GGTGATTGAA
GTGGGCAGTG ATTTAGACTT ACAAAAACTG ATTCCGAGCC AGCATTTTAC CAAGCCACCG
GCTCGTTATA GTGAAGCATC ATTAGTGAAA GAGCTGGAAA AACGGGGTAT TGGCCGTCCA
TCGACTTATG CCTCTATTAT TTCGACCATT CAAGATCGTG GCTATGTGCG GGTAGAAAAC
CGTCGCTTCT ACGCAGAGAA AATGGGTGAA ATTGTGACAG ACCGCTTGGA AGAAAACTTC
CGCGAGCTGA TGAATTACGA TTTCACGGCA CGAATGGAAA GCGGTTTGGA TCAAGTCGCC
AATGATCAGG CCGAATGGAA AGCGGTGCTG GATGGCTTCT TTGCTGAATT CAGCGAGCAG
CTTGAAAAGG CAGAGAAAGA TCCTGAAGAA GGAGGAATGC GCCCGAATCA GATGGTGATG
ACCAGCATTG ATTGCCCAAC CTGTGGCCGT CAGATGGGGA TCCGTACTGC GAGTACTGGG
GTGTTCCTTG GCTGTTCCGG TTATGCATTG CCGCCTAAAG AGCGCTGTAA AACCACCATT
AACTTGGTGC CGGACGCTGA GATTTTGAAT ATTCTGGAGG GTGATGATGC GGAGACTAAC
GCATTACGTG CCCGCCGCCG TTGCCAGAAA TGTGGTACTG CGATGGATAG CTACCTTATC
GATAATCAAC GCAAGTTACA TGTTTGCGGG AATAACCCAG CGTGTGATGG CTATGAAATC
GAAGCAGGTG AGTTCCGGAT AAAAGGCTAT GAAGGCCCAA TTGTTGAGTG CGAGAAATGT
GGTTCTGAAA TGCACCTGAA AATGGGGCGC TTCGGTAAGT ACATGGGCTG CACCAATGAC
GAGTGTAAGA ATACCCGCAA GATTCTGCGT AGCGGTGAAG TTGCACCACC GAAAGAAGAT
CCGGTACCAT TGCCAGAGTT GCCTTGCGAG AAATCAGATG CTTATTTCGT CCTACGAGAT
GGCGCAGCTG GCGTGTTCTT GGCAGCCAAT ACATTCCCTA AATCGCGTGA AACCCGTGCG
CCGCTGGTAG AAGAATTGGT TCGCTTTAAA GACCGTTTGC CTGAGAAGTT GCGTTATCTG
GCTGATGCCC CTGTGGTTGA TAAAGAGGGT AATAAAACCC TGGTCCGTTT CAGCCGTAAA
ACGAAGCAAC AGTATGTTTC ATCAGAGAAA GATGGCAAAG CAACAGGCTG GTCTGCTTTC
TATATTGATG GTAAATGGGT TGAGGCAAAG AAATAA
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| Protein sequence | MGKALVIVES PAKAKTINKY LGNDYVVKSS VGHIRDLPTS GSASKKSANS AEEKAKKDDK
PKKKVKKDEK VALVNRMGVD PYHGWKAQYE ILPGKEKVVA ELKALAENAD HIYLATDLDR
EGEAIAWHLR EVIGGDDKRF SRVVFNEITK NAIQQAFNQP GELNISRVNA QQARRFMDRV
VGYMVSPLLW KKIARGLSAG RVQSVAVRLV VEREKEIKAF VPEEYWELHA DLVAKGDIPI
QMEVTHAHGK PFKPVNREQT HAALTLLENA RYKVLDREDK PTSSKPSAPF ITSTLQQAAS
TRLSFGVKKT MMMAQRLYEA GHITYMRTDS TNLSQDALTM VRGYIGDNFG DKYLPATPNQ
YSSKENSQEA HEAIRPSDVN VLAEQLKDME ADAQRLYQLI WRQFVACQMP PAKYDSTTLT
VQAGDFQLRA KGRTLRFDGW TKVMPALRKG DEDRTLPVIE VGSDLDLQKL IPSQHFTKPP
ARYSEASLVK ELEKRGIGRP STYASIISTI QDRGYVRVEN RRFYAEKMGE IVTDRLEENF
RELMNYDFTA RMESGLDQVA NDQAEWKAVL DGFFAEFSEQ LEKAEKDPEE GGMRPNQMVM
TSIDCPTCGR QMGIRTASTG VFLGCSGYAL PPKERCKTTI NLVPDAEILN ILEGDDAETN
ALRARRRCQK CGTAMDSYLI DNQRKLHVCG NNPACDGYEI EAGEFRIKGY EGPIVECEKC
GSEMHLKMGR FGKYMGCTND ECKNTRKILR SGEVAPPKED PVPLPELPCE KSDAYFVLRD
GAAGVFLAAN TFPKSRETRA PLVEELVRFK DRLPEKLRYL ADAPVVDKEG NKTLVRFSRK
TKQQYVSSEK DGKATGWSAF YIDGKWVEAK K
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