Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1901 |
Symbol | nth |
ID | 5384415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 2203822 |
End bp | 2204463 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640864885 |
Product | endonuclease III |
Protein accession | YP_001400876 |
Protein GI | 153948366 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0177] Predicted EndoIII-related endonuclease |
TIGRFAM ID | [TIGR01083] endonuclease III |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.0000183349 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAG AGAAACGTGT CACTATTTTG ACCCGTCTGC GGGATAACAA CCCACATCCA ACGACTGAAT TAGTTTACTC GACGCCCTTT GAACTGCTTA TTTCTGTGCT GCTATCGGCT CAAGCAACAG ATGTCAGTGT CAACAAAGCG ACAGCCCGGC TGTACCCTGT GGCCAATACC CCCCAAGCCA TCTTGGATCT GGGGGTTGAT GGCTTAAAGG AATATATCAA AACCATTGGC CTGTATAATA CCAAAGCTGA AAATGTCATC AAAACCTGCC GCATTTTACT GGAAAAGCAT CAGGGAGAGG TACCAGAGGA TCGGGCGGCC TTGGAAGCGT TACCCGGTGT CGGTCGTAAG ACCGCCAATG TGGTGTTAAA TACGGCATTT GGCTGGCCCA CAATTGCCGT TGATACGCAT ATATTTCGGG TGTGTAACCG CACCGGGTTT GCTCCTGGTA GCAATGTTGA TCAGGTTGAG GAAAAACTAC TCAAAGTGGT CCCGGCCGAA TTTAAACTAG ATTGTCACCA CTGGCTGATT CTTCATGGGC GCTACACCTG TATTGCCCGA AAACCCCGTT GCGGTTCATG CATTATTGAA GACTTATGCG AGTTTAAAGA GAAAGTCTAT CCAGAGCATT AG
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Protein sequence | MNKEKRVTIL TRLRDNNPHP TTELVYSTPF ELLISVLLSA QATDVSVNKA TARLYPVANT PQAILDLGVD GLKEYIKTIG LYNTKAENVI KTCRILLEKH QGEVPEDRAA LEALPGVGRK TANVVLNTAF GWPTIAVDTH IFRVCNRTGF APGSNVDQVE EKLLKVVPAE FKLDCHHWLI LHGRYTCIAR KPRCGSCIIE DLCEFKEKVY PEH
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