| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1898 |
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| Symbol | rnfD |
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| ID | 5384862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 2201433 |
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| End bp | 2202488 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640864882 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_001400873 |
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| Protein GI | 153950517 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.000890803 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAGATTG CCAGTTCCCC TTTTACCCAC AATCAACGCA GTACCCGTCG TATTATGCTG
CTGGTTATTC TGGCCTGTAT TCCGGGGATT ATCGCCCAGA CTTACTTCTT CGGTTATGGC
AGCCTGATTC AAGTCATGCT GGCTATGATC ACTGCACTGT TGGCCGAAGG TGCCGTATTG
CAGTTACGTA AACAACCCGT CATGGCGCGG TTACAAGATA ACTCAGCCCT GCTGACTGCC
TTATTGTTGG GGATAAGCCT CCCCCCATTG GCCCCCTGGT GGATGATCGT GCTGGGCACG
CTATTTGCTA TTGTCATTGC CAAACAACTC TATGGTGGCC TAGGGCAGAA CCCGTTTAAC
CCGGCAATGG TCGGTTATGT TGTGCTCCTT ATTTCATTTC CGGTACAAAT GACCAGTTGG
CTGCCACCGC TACCGTTGCA AGGAACGTCG GTGGGATTCT ATGACAGTCT CTTAACCATT
TTCACCGGTT ATACCCACAG TGGTGAGAAT ATTCATCAGC TCCAAGTTGG CTATGACGGC
ATCAGCCAAG CGACGCCACT GGATACGTTT AAGACCTCGC TACGTTCACA GCCAGCAGAT
CAAATTCTGC AACAGCCCAT ATTTGGCGGT GTGCTGGCGG GTTTAGGCTG GCAATGGGTT
AATCTCGGCT TTCTGGTTGG CGGTTTATTG CTACTGTGGC GTAAAGCTAT TCACTGGCAT
ATTCCCGTGA GCTTCCTGCT CGCCTTAGGA GGTTGTGCCG CAGTGAGCTG GATGATTGCT
CCACAAAGCT TTGCCTCACC AATGCTACAT TTGTTCTCCG GTGCCACCAT GTTAGGTGCA
TTTTTCATTG CTACCGATCC TGTCAGTGCC TCTACAACAC CCCGTGGCCG CCTGATATTT
GGTGCCCTCA TTGGTATTCT GGTGTGGCTA ATCCGGGTAT ATGGCGGCTA TCCGGATGGT
GTTGCTTTTG CCGTGTTGCT CGCCAATATT ACAGTTCCGT TGATTGACCA CTATACCCAA
CCTCGGGTCT ATGGCCATAA AAGCGGGCAC AAATAA
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| Protein sequence | MQIASSPFTH NQRSTRRIML LVILACIPGI IAQTYFFGYG SLIQVMLAMI TALLAEGAVL
QLRKQPVMAR LQDNSALLTA LLLGISLPPL APWWMIVLGT LFAIVIAKQL YGGLGQNPFN
PAMVGYVVLL ISFPVQMTSW LPPLPLQGTS VGFYDSLLTI FTGYTHSGEN IHQLQVGYDG
ISQATPLDTF KTSLRSQPAD QILQQPIFGG VLAGLGWQWV NLGFLVGGLL LLWRKAIHWH
IPVSFLLALG GCAAVSWMIA PQSFASPMLH LFSGATMLGA FFIATDPVSA STTPRGRLIF
GALIGILVWL IRVYGGYPDG VAFAVLLANI TVPLIDHYTQ PRVYGHKSGH K
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