| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_1863 |
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| Symbol | |
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| ID | 5388188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | + |
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| Start bp | 2158560 |
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| End bp | 2160377 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640864847 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_001400838 |
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| Protein GI | 153949237 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGGAA ATTTATCAGC CGTCAGCACG CCCACTACGG CGTGCAATCA ACGACTCCGT
GACTCTTGGC TGCGTAGCCA ACTCTACGGT TTAGATCGCA TGTCTGACGA TGTTCCCCGT
ATTGAGCAGG GAGAACTGGC CGACTTGCTG GTCAGTCACG CCGTATTACA GCAATTTTCT
CAGCCAACAG TGAAAGCGCT GGCTGAGAAA ATTGCCGATA AGCAATCGGT AGTGGTCCTC
GCCGATGCCA GTGGGTTGGT ATTGAATACC TTCGGCGATA TACAGGCTCT ACAAAAAGCA
CAACAGTTTG CCCTGACGCC CGGTAATCTA TGGAGTGAAT GCAGCCGAGG AACGAATGCC
ATTGGTACTG CCCTGGCGAT TGATGATAGC TGCGAAATCT ATGGGCATCA GCATTATCTT
ATTAACAATC AGGGGCTTTA CTGCGCGGCT ATGCCACTGC AAGCGCCTAA CGGACAGATT
GCCGGTGTGC TGGATATATC GGGTCCGGCG TATCACTCCC ATCCCCACAC ACTGGCATGG
ATAAAAAACG CGGCGAAACA AATTGAGTAT TTATGGGTGA AACAGAGCCT GCATCCAGAT
CAGTGGCTGA TGAGTCTGCA TCCACAAATA CAAGGCATTG ATAATATTGA AGAGCTACTA
CTGGTGTTCT CTGATAACAC TCTGATGGCA GCTAACCGTC TGGCGATGCA CGAGTTGGCG
TTGGGGGCCG ACCAGTTTGG TGCCCTAACC TTCCAGCAAC TTTTTCCGCA AAGTAAGCAA
GTTGCCAATC AGGTGCCGCA CCCTTTAATG GCTCGCAATC AACAACGTTA TTTCTTTCGC
CTACGGGCGC CAGCACGAAG CCACTTCCCT GCAATAATAC ACGTTCCCAC AACACACGTT
CCCACAACAT CGGTAACTTC GCCTGACTTA TCCTTCTCAC TGCGCGATGA CGATAAGAAA
ATGGTGCGAT TACTCAATGC TGGCGTCTCG CTTTGTATAA ATGGTGAGAC TGGCAGTGGT
AAGGAGTATG TTAGCCGGGC TTTACATCAG CAGAGCCGGT GGCGGCAAGG TAAGTTTGTT
GTTATCAACT GCGCTGCCAT ACCAGAGTCT CTGATTGAAT CAGAACTCTT CGGATACCAA
CCGGGTGCAT TTACGGGGGC CAGCAAAAAT GGCTATATTG GCAAAATTCG GGAGGCCGAC
GGTGGCGTAC TGTTTCTGGA TGAAATAGGC GATATGCCGT TATCGCTACA AACCCGCTTA
CTCCGAGTAT TGCAAGAAAA AGAGGTGACG CCGCTGGGCT CTAGCCGTAG TTGGCCAGTC
AATTTTGCGG TGGTCTGTGC TACGCATCGG GATCTTCCCC AGTTGGTCGC GGAGGGCGGG
TTCCGTGAAG ACCTCCTCTA CCGATTGCAA GAGTTCTCTC TAACCATTCC GCCACTGCGT
GAATGGCCCG CGCTGCCCGC CTTTATTTTA CAGCTATGGA GGGCGTTGGG CGGTGAGCAA
CGGGGCATTC TCTTTACGCC AGCACTGCTT GATACGCTGG CGAAGCATCC CTGGCCGGGT
AATGTGCGTC AACTGCAAAG TTTACTGAAG GTATTATTCG CCCTGGCGGA TGACGATGAG
GTTCTTGATT GCGAGACACT GCCTGACAAC TTCCGAGGTG AGAATAGTGA ACCGTACCCC
GCGCTGCAAC AGCATGACAA GCAGTTTATT GAGAAAACAC TGCAATATTT TAACGGTAAC
ATCAGTAAAA CTGCCAAGGC TTTGGGCATA GCACGCAGTA CGCTATACCG CCGTGCCGCG
CGAGAAAAAC GCCAGTAA
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| Protein sequence | MQGNLSAVST PTTACNQRLR DSWLRSQLYG LDRMSDDVPR IEQGELADLL VSHAVLQQFS
QPTVKALAEK IADKQSVVVL ADASGLVLNT FGDIQALQKA QQFALTPGNL WSECSRGTNA
IGTALAIDDS CEIYGHQHYL INNQGLYCAA MPLQAPNGQI AGVLDISGPA YHSHPHTLAW
IKNAAKQIEY LWVKQSLHPD QWLMSLHPQI QGIDNIEELL LVFSDNTLMA ANRLAMHELA
LGADQFGALT FQQLFPQSKQ VANQVPHPLM ARNQQRYFFR LRAPARSHFP AIIHVPTTHV
PTTSVTSPDL SFSLRDDDKK MVRLLNAGVS LCINGETGSG KEYVSRALHQ QSRWRQGKFV
VINCAAIPES LIESELFGYQ PGAFTGASKN GYIGKIREAD GGVLFLDEIG DMPLSLQTRL
LRVLQEKEVT PLGSSRSWPV NFAVVCATHR DLPQLVAEGG FREDLLYRLQ EFSLTIPPLR
EWPALPAFIL QLWRALGGEQ RGILFTPALL DTLAKHPWPG NVRQLQSLLK VLFALADDDE
VLDCETLPDN FRGENSEPYP ALQQHDKQFI EKTLQYFNGN ISKTAKALGI ARSTLYRRAA
REKRQ
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