Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1600 |
Symbol | lolC |
ID | 5387943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1858197 |
End bp | 1859399 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640864581 |
Product | outer membrane-specific lipoprotein transporter subunit LolC |
Protein accession | YP_001400577 |
Protein GI | 153950693 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00000642321 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATCAAC CTGTCGCCCT ATTTATCGGC CTGCGTTATA TGCGTGGGCG TGCTTCTGAC CGCTTCGGTC GGTTTGTTTC GTGGCTTTCT ACCATTGGCA TTACGCTGGG GGTGATGGCT CTTATCACGG TATTGTCTGT GATGAATGGT TTTGAGCGTA ATCTGCAAGA TACGATTTTG GGGCTTATGC CACAGGCGCT GATTACCACA CCACAAGGTT CTTTGGATCC AAACAAGATA CCGGCTTCAA CCCTAAAATC GCTGAGCGGT GTCAGTGATA TTGTGCCGTT GACCACGGCG GATGTGGTGT TACAAAGTGC GCGTAATTTG GCCGCCGGTG TGATGCTGGG GGTTGATCCA CAGCAGCATG AACCATTGGC CAATTATTTG GTTAACGTGG ATATAAAAGC GTTAGCGCCA GGTAGCTACA ACATCATCCT CGGCGAGAAG TTAGCGGGCC AGCTCGGGGT TAAACGCGGT GAAACACTGC GTTTGATGGT ACCGAGCGCC AGCCAATTCA CGCCAATGGG CCGTATTCCC AGCCAGCGTG TGTTTAATAT TATCGGCACC TTTGCAGCGA ATAGCGAAGT TGATGGCTAT CAAATTTTGG TTAACCAGCA GGATGCATCA CGCCTGATGC GTTACCCTCT TGGGAATATT ACCGGCTGGC GCTTATTCCT CTCGCAGCCG CTGTCGGTCG ATAGCCTGAG CCAGCAGAGT TTGCCAGAAG GCACCGTATG GAAAGACTGG CGTGACCGTA AAGGTGAGCT TTTCCAGGCC GTGCGGATGG AAAAGAACAT GATGGGGTTA TTGCTCAGTC TGATTATTGC TGTCGCAGCC TTTAATATCA TTACGTCACT GGGGCTGTTA GTGATGGAAA AACAAGGCGA GGTGGCGATT TTGCAAACCC AAGGGTTGAG TCGCCGGCAA ATTATGTTGG TGTTTATGGT GCAAGGTGCC ACCGCTGGGG TTATCGGCGC ATTGCTAGGG GTAGGGCTGG GGGTTTTACT CGCCAGCCAA TTGAACACCC TGATCCCTAT TTTGGGCGTA TTGATTGATG GCGCAACGCT ACCCGTGGAG ATTGACCCAC TTCAGGTTAC GGTCATTGCA CTGCTAGCCA TGGTGATCGC TCTATTGTCC ACGCTGTACC CTTCCTGGCG CGCCGCCGCC GCACAACCCG CAGAGGCTTT ACGCTATGAG TAA
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Protein sequence | MYQPVALFIG LRYMRGRASD RFGRFVSWLS TIGITLGVMA LITVLSVMNG FERNLQDTIL GLMPQALITT PQGSLDPNKI PASTLKSLSG VSDIVPLTTA DVVLQSARNL AAGVMLGVDP QQHEPLANYL VNVDIKALAP GSYNIILGEK LAGQLGVKRG ETLRLMVPSA SQFTPMGRIP SQRVFNIIGT FAANSEVDGY QILVNQQDAS RLMRYPLGNI TGWRLFLSQP LSVDSLSQQS LPEGTVWKDW RDRKGELFQA VRMEKNMMGL LLSLIIAVAA FNIITSLGLL VMEKQGEVAI LQTQGLSRRQ IMLVFMVQGA TAGVIGALLG VGLGVLLASQ LNTLIPILGV LIDGATLPVE IDPLQVTVIA LLAMVIALLS TLYPSWRAAA AQPAEALRYE
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