Gene YpsIP31758_1535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_1535 
Symbolcas1 
ID5387381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand+ 
Start bp1788553 
End bp1789533 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content48% 
IMG OID640864517 
ProductCRISPR-associated protein Cas1 
Protein accessionYP_001400513 
Protein GI153949474 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03637] CRISPR-associated endonuclease Cas1, YPEST subtype 


Plasmid Coverage information

Num covering plasmid clones49 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAACG CTATTCATTC CTCTGATTTG AAAACGATCC TGCATTCAAA ACGATCCAAT 
ATTTACTATT TAGAATATTG CCGCGTATTG GTTAATGGTG GGCGAGTTGA ATATGTCACC 
GATGAAGGTA AACAATCCCT TTACTGGAAT ATCCCCATAG CGAACACCAC CGTTATTATG 
CTGGGAACCG GGACTTCGGT GACTCAGGCT GCTATGCGTG AGTTTGCCCG AGCCGGGGTC 
TTAGTCGGTT TTTGTGGCGG GGGTGGGACG CCGCTTTTTG CGGCTAATGA CGTAGAGGTC 
AATGTCTCGT GGCTCACTGC ACAAAGCGAA TACCGGCCAA CCGAGTATCT GCACGATTGG 
GTCAGTTTCT GGTTCGATGA TGAAAAAAGA CTGGCAGCAG CAGTGGCTTT CCAGCGCATC 
AGGATCGCCC AAATTCAACA ACATTGGCTC AGCAGCCACA TACAGCGCGA ATCTCTTTTT 
CCGGTTAATC ACGATCAATT ATTATTTATC CTCAGCCGTT TTGAGCAAAA TTTAGCAAAT 
TGTCTCACCA GTAATGACCT TATGGTTCAG GAAGCGGTAT TAACAAAGGC ACTCTATAAA 
CTGGCTGCTA ATACAGTGAA TTACGGCGAT TTCACCCGCG CTAAACGCGG TGGGGGCATC 
GATCTAGCTA ATCGTTTTCT CGATCACGGA AATTATCTCG CCTATGGCTT AGCTGCGACG 
GCGACATGGG TTATTGGCTT ACCCCATGGT CTGTCTGTTT TACACGGTAA GACCCGGCGT 
GGTGGTTTGG TCTTTGATGT GGCCGATTTA ATTAAAGATG CGCTAGTGCT ACCGCAGGCA 
TTTATTGCCG CCATGCAGGG AGAAGAAGAA CAAGAATTTC GTCAGCGCTG CATTAGCGGG 
TTTCAACGAA CCGAAGCGCT GGATGTGATG ATTGATGGAA TAAAAGAAAC GGCAGCGTTA 
TGTAGCCAGG TTCCGCGATG A
 
Protein sequence
MENAIHSSDL KTILHSKRSN IYYLEYCRVL VNGGRVEYVT DEGKQSLYWN IPIANTTVIM 
LGTGTSVTQA AMREFARAGV LVGFCGGGGT PLFAANDVEV NVSWLTAQSE YRPTEYLHDW 
VSFWFDDEKR LAAAVAFQRI RIAQIQQHWL SSHIQRESLF PVNHDQLLFI LSRFEQNLAN 
CLTSNDLMVQ EAVLTKALYK LAANTVNYGD FTRAKRGGGI DLANRFLDHG NYLAYGLAAT 
ATWVIGLPHG LSVLHGKTRR GGLVFDVADL IKDALVLPQA FIAAMQGEEE QEFRQRCISG 
FQRTEALDVM IDGIKETAAL CSQVPR