Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1410 |
Symbol | mnmC |
ID | 5388284 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 1648326 |
End bp | 1650395 |
Gene Length | 2070 bp |
Protein Length | 689 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 640864393 |
Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
Protein accession | YP_001400389 |
Protein GI | 153947507 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000000203784 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACCAAC GCCCAATCCA AACCGCAACA CTCAGCTGGA ATGAACAGGG TACACCTGTA TCTGAACAGT TTGGTGACAT CTATTTTTCC AATGAAGATG GTCTGGAAGA GACTCACCAC GTTTTTCTCA AAGGGAATGG GTTTCCTGCA CGCTTCGCTT CCCACCCGCA GCAAAGCTGT ATTTTTGCTG AAACGGGTTT TGGCACTGGT TTAAACTTCC TGACATTATG GCGTGATTTT GCCCTATTTA GGCAGCAATC GCCCAATGCT ACGCTTCGGC GGTTGCACTA CATTAGTTTT GAAAAATATC CACTTCACGT CGCCGATCTA GCCTCAGCCC ATGCCCGTTG GCCGGAGTTA GCCTCTTTCG CTGAACAACT GCGAGCGCAG TGGCCCCTAC CGCTGGCCGG TTGTCATCGT ATTTTGCTGG CTGACGGCGC TATTACGTTG GATTTATGGT TTGGTGATGT CAATACCCTA TTACCCACAT TGGACGATAG CCTGAATAAT CAGGTAGATG CCTGGTTCCT TGATGGTTTT GCTCCCGCCA AGAATCCAGA TATGTGGAAT GAGCAGTTGT TCAATGCCAT GGCGCGAATG ACCAGGCCGG GAGGCACTTT TTCAACCTTT ACCGCCGCCG GATTTGTGCG TCGTGGTTTG CAGCAGGCAG GGTTTAACGT AACCAAAGTG AAAGGTTTCG GGCAAAAACG GGAAATGCTG ACGGGCACCC TGCCACAACA GATTCATGCG CCCACGGCCC CTTGGTATCA TCGGCCTGCC GCCACGCGCT GTGATGATAT TGCCATTATC GGTGGCGGGA TTGTCAGCGC CTTGACCGCA CTGGCCTTAC AACGTCGCGG GGCGGTGGTC ACGCTCTACT GTGCTGACGC ACAGCCAGCA CAGGGGGCAT CAGGCAACCG ACAAGGGGCA CTCTACCCGT TGCTCAATGG TAAAAATGAT GCACTGGAAA CCTTTTTTAC CAGTGCCTTT ACCTTTGCCC GCCGTCAGTA CGACCAACTG CTTGAGCAAG GGATCGCCTT TGACCATCAG TGGTGCGGTG TCAGCCAATT AGCGTTTGAT GATAAGAGCC GTGGCAAAAT TGAGAAGATG CTGCATACAC AGTGGCCAGT TGAGTTTGCC GAAGCGATGA GCCGTGAGCA ACTCAGTGAG TTGGCCGGGC TGGATTGCGC CCATGATGGC ATACACTATC CTGCTGGCGG TTGGCTCTGC CCTTCTGACC TCACTCACGC ACTGATGATG CTAGCGCAAC AACATGGCAT GACCTGCCAC TATCAACATG AACTGCAGCG ATTAAAACGC ATTGATAACC AGTGGCAACT GACCTTTGGT CAATCACAAG CGGCTAAACA TCATGCCACC GTCATTTTAG CAACTGGCCA CCGCTTACCT GAATGGGAAC AAACTCACCA TCTGCCCTTG TCTGCGGTAC GTGGGCAGGT GTCACACATC CCGACCACCC CGGTGCTCAG CCAACTGCAA CAGGTGTTGT GCTATGATGG TTACCTGACG CCAGTCAACC CAGCCAATCA GCATCATTGT ATTGGTGCCA GTTATCAGCG CGGCGACATC GCGACTGATT TTCGCCTAAC CGAGCAGCAG GAGAACCGTG AGCGTTTGCT ACGCTGTCTG CCACAAGTCA GTTGGCCGCA GCAGGTAGAT GTCAGCGATA ATCAGGCTCG GTGTGGCGTT CGCTGCGCTA TCCGCGACCA TTTACCGATG GTCGGTGCCG TGCCGGATTA TGCTGCAACA CTGGCTCAAT ATCAGGATCT GTCTCGTCGT ATTCAGCATG GGGGTGAGAG CGAGGTAAAT GATATCGCTG TCGCGCCAGT CTGGCCTGAG TTATTTATGG TCGGGGGGTT AGGCTCGCGT GGCTTATGCA GTGCACCATT GGTGGCCGAG ATTCTGGCCG CGCAGATGTT CGGTGAACCA TTGCCGTTAG ATGCCAAAAC GCTGGCAGCA TTGAATCCTA ACCGTTTTTG GATCAGAAAA TTATTGAAAG GCAGGCCGGT ACAAACTCGC TCCCCGGCCA CCCAAGAGTC ATCAAGATGA
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Protein sequence | MNQRPIQTAT LSWNEQGTPV SEQFGDIYFS NEDGLEETHH VFLKGNGFPA RFASHPQQSC IFAETGFGTG LNFLTLWRDF ALFRQQSPNA TLRRLHYISF EKYPLHVADL ASAHARWPEL ASFAEQLRAQ WPLPLAGCHR ILLADGAITL DLWFGDVNTL LPTLDDSLNN QVDAWFLDGF APAKNPDMWN EQLFNAMARM TRPGGTFSTF TAAGFVRRGL QQAGFNVTKV KGFGQKREML TGTLPQQIHA PTAPWYHRPA ATRCDDIAII GGGIVSALTA LALQRRGAVV TLYCADAQPA QGASGNRQGA LYPLLNGKND ALETFFTSAF TFARRQYDQL LEQGIAFDHQ WCGVSQLAFD DKSRGKIEKM LHTQWPVEFA EAMSREQLSE LAGLDCAHDG IHYPAGGWLC PSDLTHALMM LAQQHGMTCH YQHELQRLKR IDNQWQLTFG QSQAAKHHAT VILATGHRLP EWEQTHHLPL SAVRGQVSHI PTTPVLSQLQ QVLCYDGYLT PVNPANQHHC IGASYQRGDI ATDFRLTEQQ ENRERLLRCL PQVSWPQQVD VSDNQARCGV RCAIRDHLPM VGAVPDYAAT LAQYQDLSRR IQHGGESEVN DIAVAPVWPE LFMVGGLGSR GLCSAPLVAE ILAAQMFGEP LPLDAKTLAA LNPNRFWIRK LLKGRPVQTR SPATQESSR
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