Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1311 |
Symbol | |
ID | 5387394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 1535407 |
End bp | 1537443 |
Gene Length | 2037 bp |
Protein Length | 678 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640864287 |
Product | efflux ABC transporter, ATP-binding/permease protein |
Protein accession | YP_001400290 |
Protein GI | 153949894 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00000105037 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAGGAC CACAACAAGG TAAAATTTTG CTCCGGCTCG AAAATGTCAG TCGTGAATTT ATAACGGGCG AACAGACCGT CCGCGTGCTG AATAATATCA ATTTAACCCT CCACAGCGGA GAAATGGTGG CGATTGTCGG CACATCCGGT TCAGGCAAAT CAACACTAAT GAATATTCTC GGCTGTCTGG ATAAACCCAG CGCTGGTGAA TATTGGGTAG CGGGACGTAT CCCTCAGTAT TTGGGCAGTG ATGCTCTCGC TGAACTGCGT CGCGAACACT TTGGCTTTAT TTTTCAGCGT TACCACTTAC TGAACGATTT AAGTGCGCGC GAAAATGTCG AAATCCCAGC GATTTACGCA GGCATTGATC GTGAAGAACG TCGTAAACGG GCGGTCAATC TGCTCTCACG TATTGGATTG GCTGAACGGC TGGACTATCG GCCCAGCCAG CTCTCCGGGG GGCAACAGCA GCGGGTCAGT ATCGCCAGGG CCTTGATGAA TGGCGGTGAC GTTATTCTGG CAGATGAACC TACTGGGGCG CTTGACACCC ACAGCGGCAA CGAAGTCTTA AATATCCTTA AGGACTTGCA CCAACAGGGT CATACCGTGG TGATTGTCAC CCACGATATG TCGATTGCAG AACATGCTCA ACGCATTATT GAACTCAAAG ACGGCGAAAT TATCGCTGAT CGGCCAAGGG ATCACGCACA AGAAAAGCCA AAAATGGTCG ATATCCCTTC TGTAATCGAT ATCCCTTCTA TGGACGAGAA AATATCTACG GGAGCACAAC AAGAGACCGA AATTGCCCGC AAACCGCTCC TGACACGTTG GAAAGTACAG TATGACCGCC TACACGAGGC GTTCAAAATG GCAATACTGG CGATGGCGGC ACAGCGCCTA CGCACCGCCC TAACCATGCT AGGTATTATT ATTGGTATTG CATCGGTGGT CTCGGTCGTC GCTCTGGGAA AAGGATCACA ACAACAGGTT CTGGCTAATA TCAATGCGAT GGGGACCAGT ACACTGGAAA TTTTTCCCGG TAAAGATTTT GGCGATATGC GCTCCGCGGC GATCCATACT TTGCGGGATA CCGATGCCGA TGTGCTGGCC CAGCAAGGGT ATATTCATAG CGTCACCCCT ACCGTTTCGA CCAGCGTGAC ACTGCGCTAT GGCAATAAAT CGGTCAGTGG CACAGTGAAT GGTGTGGGTG AGCAATATTT TTTGGTTCGC GGTTACACAA TAGCTCAGGG GATGGCATTT ACCCGCACCA GTGTTAACGA CTTGATGCAA GAAGCCGTTA TTGACGAAAA CACCCGCGAT AAACTCTTCC CCAACGGGGA AACGCCATTA GGGAAAGTGA TCCTGCTTGG TTCCCTGCCC TGCCGGGTAA TTGGTGTAGC GGCCAAGAAA CAGAGCGGGT TTGGCAGTGA TGAAAATCTG AATGTTTGGA TCCCTTATAC TACGGCGATG AAACGGATGC TCGGGCAATC CTATCTGAAA AGTATCACGG TGCGAGTTAA CGATGATATT GATCTGGCGA ATGCGGAGCA AGGCGTGATC AAGCTACTGA GCCAACGCCA CGGCACCCAA GATTTTTTCG TAATGAATAC GGACAGTATT CGCCAGACCA TTCAAGCAAC CACATCAACG ATGACGTTGC TGGTATCCAT GATTGCGGTT ATTTCATTGA TCGTCGGTGG TATTGGCGTG ATGAATATCA TGTTGGTCTC AGTGACCGAA CGCACCAAAG AGATTGGTGT ACGCATGGCT GTCGGTGCAC GGGCCAGCGA TATTATGCAG CAGTTTTTAA TTGAAGCTGT CTTGGTCTGT TTGCTAGGGG GTAGCCTCGG TGTCGCCTTA TCGTTAGGGA TCGGGCTATT ATTCAGCCTG TTTAGCAGCA ACTTTTCAAT GGTTTACTCC GCGGCCTCGA TTATTACCGC TTTTGTTTGT TCCAGCTTGA TTGGGGTCAT TTTTGGTTTC TTCCCCGCGA AAAGAGCTGC GGAGATGGAC CCCATTAGGG CGTTAGAACG GGAGTAG
|
Protein sequence | MTGPQQGKIL LRLENVSREF ITGEQTVRVL NNINLTLHSG EMVAIVGTSG SGKSTLMNIL GCLDKPSAGE YWVAGRIPQY LGSDALAELR REHFGFIFQR YHLLNDLSAR ENVEIPAIYA GIDREERRKR AVNLLSRIGL AERLDYRPSQ LSGGQQQRVS IARALMNGGD VILADEPTGA LDTHSGNEVL NILKDLHQQG HTVVIVTHDM SIAEHAQRII ELKDGEIIAD RPRDHAQEKP KMVDIPSVID IPSMDEKIST GAQQETEIAR KPLLTRWKVQ YDRLHEAFKM AILAMAAQRL RTALTMLGII IGIASVVSVV ALGKGSQQQV LANINAMGTS TLEIFPGKDF GDMRSAAIHT LRDTDADVLA QQGYIHSVTP TVSTSVTLRY GNKSVSGTVN GVGEQYFLVR GYTIAQGMAF TRTSVNDLMQ EAVIDENTRD KLFPNGETPL GKVILLGSLP CRVIGVAAKK QSGFGSDENL NVWIPYTTAM KRMLGQSYLK SITVRVNDDI DLANAEQGVI KLLSQRHGTQ DFFVMNTDSI RQTIQATTST MTLLVSMIAV ISLIVGGIGV MNIMLVSVTE RTKEIGVRMA VGARASDIMQ QFLIEAVLVC LLGGSLGVAL SLGIGLLFSL FSSNFSMVYS AASIITAFVC SSLIGVIFGF FPAKRAAEMD PIRALERE
|
| |