Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1092 |
Symbol | chbC |
ID | 5387071 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 1294841 |
End bp | 1296202 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640864068 |
Product | PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC |
Protein accession | YP_001400073 |
Protein GI | 153949365 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
TIGRFAM ID | [TIGR00359] phosphotransferase system, cellobiose specific, IIC component [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.0153711 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGCACAT TTATTACGTC GTTGGAGAAG GTCATATTAC CCTTCGCCAT TAGAATTGGC AGGCAGCAAC ACGTTAATGC TATCAAGAAC GGGTTTATCC GGCTGATGCC ATTAACCCTG ACTGGGGCCA TGTTCGTTCT AATTAATAAT GTTTTCTTAA GTTTCGGTGA AGGGTCGTTC TTCTTTTCAA TGGGTGTGCG ATTAGACGGC GATACCATTA CCATGCTAAA TGGTTGGAAA GCCATCGGTG GTAACGTTTA TAACGGAACG CTCGGGATAA TGTCGTTAAT GACGCCATTC TTTATCAGTA TGGCACTGGC CGAAGAGAAG AAGGTGGATC CACTCTCTGC CGCCTTACTG GCCATCGCAG CCTTTATGAC CGTGACCCCG TTCAGTGTTG GCGAGGCCTA TGCGGTTGGT GCCAATTGGC TCGGGGGGGC CAATATCATC TCGGGTATCA TCATCGGTCT GGTGGTGGCT GAAGTATTCA CTTTCATTGT CCGACGTAAT TGGATTATCC GTCTGCCAGA TAGTGTACCC ACTTCGGTTT CCCGTTCTTT CTCGGCATTG ATTCCTGGCT TTATCATTCT TTCCATCATG GGCCTGATTT CATACACTCT GGCGCTATAT GGTACTAATT TCCATCAGAT CATTATCGAT TCCATCTCCG CCCCGCTGTC GAAAATGGGC AGTGTCGTGG GGTGGGTGTA TGTGATGTTC TCCTCTCTGC TGTGGTTCTT CGGTGTACAT GGTGCCATGG CCTTGTCTGC GCTGGAAAGT GGCATCATGA TGCCGTTCGC GTTGGAAAAC GTGGCAACCT ATACCCAATA TGGTTCGGTT GAGGCCGCAC TGGCTGCGGG TAAAGAGTTC CATATGTGGG CGAAACCGTT TGTTGATTCC TACATCTTCT TGGGCGGAAC CGGTGCAACG TTGGGGCTTA TTATTGCCAT CTTTATTGCT TCTCGCCGTG AAGATTATCG GCAGGTTGCG AAGCTGGCTG CTCCGGCGAG TATTTTCCAG ATCAACGAAC CAATCCTGTT TGGCTTACCG GTCATTATGA ACCCACTCAT GTTTATTCCG TTTATCATGG TTCAGCCGAT ATTAGCCATT ATCACGTCAG TAGCTTATTA CAGTGGCCTT ATTCCTCCGA TCACCAATAT TGCTCCGTGG ACTATGCCCG CCGGGCTAGG TGCATTCTTT AACACCAATG GTAGCATTGC TGCATTATTA TTAAGTTTGT TCAACTTGGG CGTGGCAACA CTGGTTTATC TCCCGTTCGT GATTATTGCC AATAAAGCAC AGGGCGAGAT CGACCGTACT GTCGAAAGCG AAGACGATAT TGCTAACAGC CTGAAATTCT AA
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Protein sequence | MSTFITSLEK VILPFAIRIG RQQHVNAIKN GFIRLMPLTL TGAMFVLINN VFLSFGEGSF FFSMGVRLDG DTITMLNGWK AIGGNVYNGT LGIMSLMTPF FISMALAEEK KVDPLSAALL AIAAFMTVTP FSVGEAYAVG ANWLGGANII SGIIIGLVVA EVFTFIVRRN WIIRLPDSVP TSVSRSFSAL IPGFIILSIM GLISYTLALY GTNFHQIIID SISAPLSKMG SVVGWVYVMF SSLLWFFGVH GAMALSALES GIMMPFALEN VATYTQYGSV EAALAAGKEF HMWAKPFVDS YIFLGGTGAT LGLIIAIFIA SRREDYRQVA KLAAPASIFQ INEPILFGLP VIMNPLMFIP FIMVQPILAI ITSVAYYSGL IPPITNIAPW TMPAGLGAFF NTNGSIAALL LSLFNLGVAT LVYLPFVIIA NKAQGEIDRT VESEDDIANS LKF
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