Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_1003 |
Symbol | |
ID | 5387373 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | - |
Start bp | 1204789 |
End bp | 1206153 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640863974 |
Product | putative decarboxylase |
Protein accession | YP_001399987 |
Protein GI | 153947482 |
COG category | [R] General function prediction only |
COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0026607 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGATTACAC ATGTCAGCCC GCTCGGCTCA ATGGATCTGT TATCACAGCT CGAAGTGGAT ATGCTCAAAC GTACCGCCAG CAGTGATTTG TACCGTTTAT TCCGTAATTG TTCACTGGCT GTTCTCAATT CAGGTAGCCT GACCGATAAC AGCAAAGAGT TGTTATCTCG CAATGAAACC TTTGATATCA ACGTGCTTCG CCGTGAGCGA GGAGTTAAAC TCGAGTTGGT CAACCCACCA GAACATGCGT TTGTTGACGG CAAAATTATT CGCTCATTAC AAGCAAACCT GTTCGCGGTA TTACGCGATA TCTTATTTGT AAATGGTCAA ATCGTCAGTG CGAGCAACTT CCAGCATTTG AATATGGAGA GCTCCAGTCA TTTGACTAAC CTAGTCTTTT CTATTTTACG TAATGCCCGT GCCCTACATA TTGATGAAGA ACCCAATATG GTTGTGTGCT GGGGAGGGCA TTCAATTAAT GAAACCGAGT ATTTGTACGC CCGTAAAGTG GGCAGCCAAC TGGGTTTGCG TGAATTAAAT ATCTGTACCG GCTGTGGTCC GGGAGCCATG GAAGCCCCGA TGAAAGGTGC CGCTGTCGGA CATGCTCAGC AACATTATAA AAAAGGCCGT TTTATCGGCA TGACAGAACC GTCCATTATC GCTGCAGAAC CACCAAACCC TCTGGTTAAT GAACTGGTTA TCATGCCCGA TATTGAGAAG CGGCTGGAAG CCTTCGTCCG TATCGCTCAT GGCATCATTA TTTTCCCAGG TGGGGTGGGC ACAGCAGAAG AATTACTCTA TCTATTAGGG ATTTTGATGA ATCCGGAAAA TAGTGAGCAA GTGCTGCCGC TGATTTTAAC CGGGCCAAAA GAGAGTGCGG ATTACTTCAA AGTGGTGGAT GAGTTCATCA TGAATACGCT GGGTGATGGC GCTCGTAAAT ACTATCAGAT AATTATTGAT GACCCAGACG AAGTCGCCCG TCAGATGAAG AAAGCGATGC CACTGGTGAA AGAGTATCGC CGTAATACCG GCGATGCTTA TAGCTTCAAC TGGTCTATTC GTATTGAACC AGATTTACAG CATCCGTTCG AACCAAACCA TGAAAATATG GCTAATCTGG ATCTGTCTCA TAATCAACCA CCGGAGAAAC TGGCCGCCGC ATTACGCCGG GCGTTTTCTG GGATTGTGGC AGGTAATGTC AAGGAAGTGG GTATCCAGGC TATTGAAGCG CATGGGCCAT TTAAACTGCA TGGCGATCCG CAATTAATGA AGCAAATGGA CCGCCTACTG CAAGATTTTA TTGCTCAACA TCGGATGAAG TTACCAGGTA GCGTCTATAC ACCTTGCTAT GAAATTTGTA GTTGA
|
Protein sequence | MITHVSPLGS MDLLSQLEVD MLKRTASSDL YRLFRNCSLA VLNSGSLTDN SKELLSRNET FDINVLRRER GVKLELVNPP EHAFVDGKII RSLQANLFAV LRDILFVNGQ IVSASNFQHL NMESSSHLTN LVFSILRNAR ALHIDEEPNM VVCWGGHSIN ETEYLYARKV GSQLGLRELN ICTGCGPGAM EAPMKGAAVG HAQQHYKKGR FIGMTEPSII AAEPPNPLVN ELVIMPDIEK RLEAFVRIAH GIIIFPGGVG TAEELLYLLG ILMNPENSEQ VLPLILTGPK ESADYFKVVD EFIMNTLGDG ARKYYQIIID DPDEVARQMK KAMPLVKEYR RNTGDAYSFN WSIRIEPDLQ HPFEPNHENM ANLDLSHNQP PEKLAAALRR AFSGIVAGNV KEVGIQAIEA HGPFKLHGDP QLMKQMDRLL QDFIAQHRMK LPGSVYTPCY EICS
|
| |