Gene YpsIP31758_0958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYpsIP31758_0958 
SymbolgspJ 
ID5385128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis IP 31758 
KingdomBacteria 
Replicon accessionNC_009708 
Strand
Start bp1147806 
End bp1148402 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content32% 
IMG OID640863924 
Productgeneral secretion pathway protein J 
Protein accessionYP_001399942 
Protein GI153948050 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4795] Type II secretory pathway, component PulJ 
TIGRFAM ID[TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value0.83965 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAAAC GTCCAGATTG TGGATTTACT TTACTGGAGA TGCTACTTGC CGTTGTCATT 
TTCTCAATGA TTAGTTTTAT TATTTATTCA TCCTTAAGAA TAACCATTAA AAGCAATAAT
GTCATGGGGA ATAAAGCACA AGAAATTATT AGGTTACATA GAGTTGTTAG CCTATTAGAA
CGAGATATTT CACATTCAGT CATGTCTACA GGATTACAAA ATGATTATTT TAGTAATGAA
GAACGTATTA TCGGTATAGG CGTACTTGAT AGTGACAGTT TTGGTATCCA TATGTTAAGA
AATAACAAAA TAAACACTGA GATATTTATT CATTATCAGC AGGAAAGACT CGGTTATCGA
GTGAAGAAAA ATTGCCTGGA AAGATTATCT TACTTAATTT TAAACAATAC AAATAAAGTA
GAGACTAAAT TCTCTTGCCT TATCGAAGGG ATAAATGATT TTCGTGTGAG AGTATTTCAT
CAAGGGAAAT GGTTAAATGA ATGGAGTAGG ATTGACCTTT CTCCACAAGC CATTGAAATC
ACCCTTGATG TTAAAAGTGT TGGGGTGATT AGGCGATTTA TTCTATTGCT ACATTAG
 
Protein sequence
MIKRPDCGFT LLEMLLAVVI FSMISFIIYS SLRITIKSNN VMGNKAQEII RLHRVVSLLE 
RDISHSVMST GLQNDYFSNE ERIIGIGVLD SDSFGIHMLR NNKINTEIFI HYQQERLGYR
VKKNCLERLS YLILNNTNKV ETKFSCLIEG INDFRVRVFH QGKWLNEWSR IDLSPQAIEI
TLDVKSVGVI RRFILLLH