Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0811 |
Symbol | speC |
ID | 5387725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 978327 |
End bp | 980489 |
Gene Length | 2163 bp |
Protein Length | 720 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640863775 |
Product | ornithine decarboxylase |
Protein accession | YP_001399795 |
Protein GI | 153949719 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACTAT TAAAAATAGC AACAAGCGCC CGCCTGGCTT CTTATGTAGA AACTCAGCGC GGAGTGGTGT ACCTCAATCA GACTGATTTT ACTGATGTTG CCGCGGTGGT AATGTCGGTT GAAGATGCAA ATGCGGGTAT ATTGTCAATG CTGCATGACC TTGGTTTTGC TATTCCTGCG TTTATTGCCG TGACGGCAGA ACAGACGGTC TCTGCTGATT ATTTGCCCTT GATTAAAGGT GTCATTACGC TTGGTGAAGC AAATAAAGCT TTTTATAACG CTCAGGTAGA AGCTGCCGCC AGTGAATATC AAAAGAATCT CTTACCGCCT TTTTTCTCAA CACTGAAAAA ATATGTCGAG ATGAATAACT CGACCTTTGC TTGCCCTGGC CATCAGGGGG GCGAATTTTT TCGCAAGCAT CCTGCAGGAC GCCAGTTTTT TGAATTCTAC GGTGAGACGA TTTTTCGTTC AGATATGTGT AATGCCGATG TCAAATTAGG GGATTTACTT ATCCATGAAG GGGCGGCAAA AGATGCACAG AAATATGCTG CTAAGGTATT CAATGCCGAT AAAACCTATT TTGTCCTGAA CGGGACCTCG GCGGCCAACA AGGTCGTGAC CAACGCTCTA CTGACCCGTG GTGATTTAGT GTTGTTTGAC CGCAATAACC ATAAATCTAA CCATCATGGT GCGCTGATCC AGGCGGGCGC GACGCCGGTT TATCTGGAAA CGGCTCGTAA CCCCTTTGGT TTTATTGGTG GTATTGATGC GCACTGCTTC AATGAAGATT ATTTACGTCA ACAACTGCGT GAAGTTGCTC CCGAGCGTGC AAAAGAGGCT CGGCCATTCC GATTAGCGAT CATTCAATTG GGTACCTACG ACGGTACGGT ATATAACGCC CGACAAGTAG TTGATAGCAT TGGTCATTTA TGCGATTACA TTTTGTTTGA TTCTGCTTGG GTGGGTTACG AACAATTTAT TCCGATGATG AAGGATTTCT CACCGTTATT ACTGGAATTA AATGAAAATG ACCCTGGGAT TATTGTGACT CAATCGGTAC ACAAGCAGCA GGCCGGTTTT TCTCAGACCT CTCAGGTACA TAAAAAAGAT AATCACATTA AAGGACAGAA ACGTCACTGT AACCATAAGC GTTTTAATAA TGCCTTTATG TTGCATGCAT CGACCAGTCC GTTTTATCCA TTATTTGCGG CATTGGATGT TAATGCCAAA ATACACTCTG GTGACAGTGG CCGCCGTATG TGGATGGATT GTGTAATACT CGGTATTGAA ACGCGTAAAT CGTTATTGGT ACGCTGTTCG ATGTTACGGC CTTTTATTCC TCCAGTTGTT GGCGGTAAAA ATTGGCAAGA TTATGCTACG GATGTGATTG CCAATGATGC GCGCTTCTTT AATTTTGTTC CAGATGAACG CTGGCATGGA TTTGAGGGAT ATAACCAAGA TCAGTATTTG GTTGATCCGT GCAAATTATT GCTGACGACG CCGGGAATTG ATGCCAGCAC TGGCCGATAT ACTTCGTTTG GTATTCCGGC GGCTATTTTG GCGACTTTCC TGCGTGAAAA TGGGATTGTG CCAGAAAAAT GTGATCTTAA CTCGATCCTA TTCCTGCTGA CCCCGGCAGA AAATACCGCC AAAATGGCAC ACCTAGTGGA TATGTTGGTG CAGTTTGAAC GCTATGTTGA ACAAGATGCG AAGCTGTGTG ATGTATTACC GACGATCTAT CGTAAGAATG AAGAGCGTTA TCACGGTTAT ACCTTGCGTC AGTTATGCCA AGAAATGCAT GACCTGTACG TCAGCCATGA CGTTAAGCAA TTGCAAAAGG ATATGTTCCG TAAAGCCAGT TTCCCGCGGG TAGTCATGAA CCCGCAAGAC GCCAATATTC AGTTTATCCG CGATAATATT GAGTTGATTC CTATTGCTGA AGCTGAAGGC CGTATTGCCG CCGAAGGCGC TTTGCCTTAT CCACCGGGTG TGCTGTGTGT GGTGCCCGGT GAAGTGTGGG GTGGGGCGGT TCAGCGTTAT TTTCTGGCGC TGGAAGAGGG GATTAACTTA CTGCCGGGCT TTTCACCTGA GTTACAGGGC GTTTATATCG AAAAAGGTGA TGTGTCTTGG CGGCGTATCT TTGGTTATGT GATTACGCAA TAG
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Protein sequence | MTLLKIATSA RLASYVETQR GVVYLNQTDF TDVAAVVMSV EDANAGILSM LHDLGFAIPA FIAVTAEQTV SADYLPLIKG VITLGEANKA FYNAQVEAAA SEYQKNLLPP FFSTLKKYVE MNNSTFACPG HQGGEFFRKH PAGRQFFEFY GETIFRSDMC NADVKLGDLL IHEGAAKDAQ KYAAKVFNAD KTYFVLNGTS AANKVVTNAL LTRGDLVLFD RNNHKSNHHG ALIQAGATPV YLETARNPFG FIGGIDAHCF NEDYLRQQLR EVAPERAKEA RPFRLAIIQL GTYDGTVYNA RQVVDSIGHL CDYILFDSAW VGYEQFIPMM KDFSPLLLEL NENDPGIIVT QSVHKQQAGF SQTSQVHKKD NHIKGQKRHC NHKRFNNAFM LHASTSPFYP LFAALDVNAK IHSGDSGRRM WMDCVILGIE TRKSLLVRCS MLRPFIPPVV GGKNWQDYAT DVIANDARFF NFVPDERWHG FEGYNQDQYL VDPCKLLLTT PGIDASTGRY TSFGIPAAIL ATFLRENGIV PEKCDLNSIL FLLTPAENTA KMAHLVDMLV QFERYVEQDA KLCDVLPTIY RKNEERYHGY TLRQLCQEMH DLYVSHDVKQ LQKDMFRKAS FPRVVMNPQD ANIQFIRDNI ELIPIAEAEG RIAAEGALPY PPGVLCVVPG EVWGGAVQRY FLALEEGINL LPGFSPELQG VYIEKGDVSW RRIFGYVITQ
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