Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0800 |
Symbol | |
ID | 5386030 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 961400 |
End bp | 963163 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640863763 |
Product | hypothetical protein |
Protein accession | YP_001399784 |
Protein GI | 153950751 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGACGACT TAACCCTGCG TTATTTTGAC GCTGAAATGC GCTACCTGCG TGAAGCGGGC GAAGAGTTTG CCCGCGCGCC CCCTGATCGG GCTGCCGGAT TAAATCTGGA TAAAGCCGGG GCGCGTGACC CCTATGTGGA ACGCCTGTTT GAAGGCTTTG CCTTCCTGAT GGGCCGCATG CGAGAAAAAC TGGATGATGA CCTGCCGGAG CTGACCGAAG GGTTGGTCAG CCTGCTGTGG CCGCACTACC TGCGCACCAT TCCGTCGCTT GCCATTGTGG AGTTCACCCC ACAATGGCAG GGGATGAAAG AACGCATGGG GGTGAGCAAA GGTTTTGAAG TGCTTTCCCG CCCCATTGGC GAGCGTGAAA CCCGTTGCCG CTACACCACC ACGCAGGATA TGGACTTGCT CCCGCTGACA TTGAGCCGAG CCAAATTGGA CAGTGAACCC GATGGCCGGT CGGTTATCCG GCTGCGCTTT GATTGCAGCG CGCTGGCCGA CTGGAGCCGT ATCAACCTGA GCCGCCTGCC GCTCTATTTT GATGCCGATG CGCCGCTGGC CTGCGCCCTG CATGAGGCGC TGACCCTGAA TACCGCCAAA CTCTGGATCC GGTTGCCGGG GCAGGCTGAT CGCCAGCCGC TGGACGGCCA TTTCGCGCCG CTGGGGTTCG GGGAGCAGGA TACACTGTGG CCGAAGGCCG ACAGTGCGTT CAGTGGTTAT CAGCTCTTGC TGGAGTACTT TACCTTCCGC GAAAAGTTTA TGTTTGTCGC GTTGCAGGGG CTGGATGGGA TCGAGCTGCC GGCGGAACTG CCGTGGTTTG AGATTGATGT GGTGCTGGAA AAACGCTGGC AACATGATTT CTCGTTCTCC GAAAAGAACC TGCGCCTGCA TTGTGTGCCG GTGATTAACC TGTTCCCGCT GGAATCGGAC CCGCTGTCAC TTTCTTCATT ACAGACCGAA TACCTGCTGC GCCCAATGCG CATTCAGGAC GGTTATACCG AAGTGTATTC GGTGGACTCG GTGATCTCCT CGCGTCATAC CGGGCATCAG GTCTATGTCC CGTTCACCAG TTTTCGCCAT AAAGGCGGGA TGCTGCGCCA TGATGCGCCG GAATATTACT ACCATACGCG GGTCAAACGC GGGCCTTCGG GGTTGCACGA TACCTGGCTG GTGCTGGGGG GCGAGGCGTT TGATAACCAC AGCGTCCCGG ATAATGAAAA TTTGTCGCTG AGCCTGACCG GCACTAACGG GCAGTTACCG CGTAAAGCGC TGCAAAGCAC GGTGCTGGAT ACGGCGGTGA AATCCACCGG GGCTCAGGTG CGGGTGCGTA ATCTCTCCGC GCCGTCATTG CCATGCTACC CGCCGAACCG CGACCGTTTT CACTGGCGGG TGTTGAGCCA TCTGGGCAGC AGTTTTCTGT GGATGATGGA TAACGCTGAA GTGCTGCGCG GAACGCTGGC GCTGTATGAC TGGACGGACA ACGAAATGAA CCGCCGTCGG CTGGAGGCTA TCGCTGAGGT CAAACACAGC GAGATTGAAC GCTTTGAACG GGGTTACTTG CTGCGCGGGG TACACATTGA AATCACCCTC GACAGTAACG GCTTTACCGG TACCGGGGAT ATTTGTCTGT TTGGGGAAAT GCTCAGTCGC TTCTTTGCCC TGTATACCGA TATTCATCTG TTTAATCGCC TGACTCTGAT ACTGCAACCG ACAGGAGAAC GTTTGGAATG GGAAGAGAAT CACACGACCC GAATTCCCGG CTGA
|
Protein sequence | MDDLTLRYFD AEMRYLREAG EEFARAPPDR AAGLNLDKAG ARDPYVERLF EGFAFLMGRM REKLDDDLPE LTEGLVSLLW PHYLRTIPSL AIVEFTPQWQ GMKERMGVSK GFEVLSRPIG ERETRCRYTT TQDMDLLPLT LSRAKLDSEP DGRSVIRLRF DCSALADWSR INLSRLPLYF DADAPLACAL HEALTLNTAK LWIRLPGQAD RQPLDGHFAP LGFGEQDTLW PKADSAFSGY QLLLEYFTFR EKFMFVALQG LDGIELPAEL PWFEIDVVLE KRWQHDFSFS EKNLRLHCVP VINLFPLESD PLSLSSLQTE YLLRPMRIQD GYTEVYSVDS VISSRHTGHQ VYVPFTSFRH KGGMLRHDAP EYYYHTRVKR GPSGLHDTWL VLGGEAFDNH SVPDNENLSL SLTGTNGQLP RKALQSTVLD TAVKSTGAQV RVRNLSAPSL PCYPPNRDRF HWRVLSHLGS SFLWMMDNAE VLRGTLALYD WTDNEMNRRR LEAIAEVKHS EIERFERGYL LRGVHIEITL DSNGFTGTGD ICLFGEMLSR FFALYTDIHL FNRLTLILQP TGERLEWEEN HTTRIPG
|
| |