Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0668 |
Symbol | |
ID | 5387744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 777826 |
End bp | 780945 |
Gene Length | 3120 bp |
Protein Length | 1039 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640863639 |
Product | RND efflux transporter |
Protein accession | YP_001399660 |
Protein GI | 153948647 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGCATT TCTTTATTCG TCGCCCCAAG TTTGCCATTG TTATCGCATT GGTGATCACC CTGGTTGGCT GGGTTTCACT GTATGTTATC CCGGTCGAGC AATACCCGGA TATCACGCCG CCGGTGGTCT CCGTCAGTGC TGTTTATCCC GGTGCCAGCG CCAGAGACGT GGCGCAAGCC GTCGCGTCAC CACTGGAAGC GCAGGTCAAT GGCGTCAGCC ATATGTTGTA CATGGAATCA ACCAGCGCCA ATAACGGCAG CTACCAATTG AGCATTACCT TTGCCAGTGG CACCGATCCC GATATGGCGG CGGTTGAGGT ACAAAACCGC ATTTCGCAGG TGAGCGCGCA ACTGCCTGCC GAGGTGAATG AAAATGGCAT CTCGGTACGC AAACGTGCGT CAAACCTACT ATTAGGGGTC AGCGTTTTCT CCCCGCAACA GACCCATGAC GCTCTGTTTG TCAGTAACTA CACCAGCATA CAATTGCGTG ATGCTATTGC ACGTATCAGT GGTGTCGGTG ATGTACAGGT TTTTGGTGCG CGCGATTACA GTATGCGTGT CTGGCTGGAT CCACAGCGCA TGGAATCACT GAATGTCAGC GTGCAGGATA TCGTTGCCGC GTTACAACAG CAGAACGTAC AAGCGGCGGC AGGGCAGATA GGCTCTTCAC CGTCGATGCC CAATCAACAA CAGACACTGA CCATCAGTGG GCAGGGGCGC TTGACCGATG CACGGCAGTT TGCCGATGTG ATTATCCGCA GCAACCCTCA GGGCGGTATG ATCCGCTTGG GCGATGTGGC CCGCGTGGCC TTGGGGGCAC AGAATTATCA GGTCAGTGCG GCACAAAACC AGACTGAATC AGCCTTCTTA GTGGTGTATC CGGTTCCCGG AGCCAATGCA CTTAATGTGG CCAATGGCGT CCGTGATGAA ATGGCCCGGC TGTCGGCCGC CTTTCCGGCG GATCTCACCT ATGAAATTAA TTACGACTCC ACCCTGCCGG TGACGGCGAC ACTGCATGAG ATTGCGGTGT CACTGACCTT GACACTGATT GTGGTGCTCG CCGTGGTGTA CCTTTTTTTA CAAAGTCTGC GCGCGACCTT TATTGTGGCG CTCACGGTTC CGGTCTCGTT ACTTGGCACC TTTGCTGTGC TGTATGTCTT TGGTTATTCA GCCAATACTC TCAGTTTGTT CGCTATTATT CTGGCCCTGA CCATTGTGGT GGATGATGCC ATTGTGGTGG TCGAAAACGT TGAGCGGTTA TTGTCGAACG ACCCTCATCT TTCACCGGCA GAGGCCACCC GGCAGGCGAT GAGCCAGATT GCCGGGCCGA TCATCGCCAC CACACTGGTG CTGATGGCGG TATTTGTGCC AATCGCTATC TTGCCGGGGA TTATTGGCGA GTTGTATCGC CAGTTTGCGG TAACGCTTTC GGCGGCGGTC ATTCTCTCCA GTATCAATGC GTTAACGCTG AGTCCGGCGC TGTGTGCCGT CCTGCTTAAG CGGCGCACAC TCGCAACGAC TGGCATGTTC GGCACGATTA ACAAGGGGCT TGATCGCGCC CGTGATGGTT ATGTTGGCTT AACGGGGCGG ATCAACCGCC GTGCGGTATT TAGTATCGCC GCGCTGCTAC TGGTGGGGTT AGCAACATGG TGGGGTTATA GCCGCCTGCC AACCTCGTTC CTGCCAGAGG AAGATCAGGG CTATTTCTTT GTTAGCTTAC AATTGCCAGA TGGTGCCTCA CTGAATCGAA CCCAAACGGT GATGGACCAG ATGTATCAAC AGGTGAGCAC GAATGATGCC GTTGAGGATG TAATAAAAAT TACGGGGTTC AGCCTGCTCA GTGGCAACAA TGCGCCCAAT GCTGGTTTTG CCATTGTGAT GCTAAAACCT TGGGGCCAGC GGCCGCATAT TGATCGGGTG CTGGCCAGTA TTCAGGCCAA TCTGGCGGCT ATCCCCTCGG CAATGATTAT GGCGGTGAAC CCGCCAGCGA TTGCTGGTTT GGGCAGTGCT TCGGGCTTTG ATTTGCGCAT TCAGGCACTG CTAGGCCAAT CGCCGCAAGA GCTGGCGCAG GTGAGCCAAG GGATTATTTT TGCCGCCAAT CAGGACCCGA CATTGAGCCG GGTCTTTACC ACCTTCAGTG CTTCGGTGCC TGAAACCAAT TTGAGTATCG ATCGTGACCG CGCGGCCTTG TTACAAGTGC CGGTCAGCCG AATCTTCCAA ACGCTGCAAA CCTCTCTGGG GGGGATGAAT GCCGGTGATT TCACCTTGAA TAACCGTATG TTCCGGGTGC AATTACAAAA CGATATGAAT TTCCGCCAGC GCACGGCGCA GATCAATAAC CTGAATGTAC GCAGCGATAA CGGGGCATTA GTCAGTTTGG CGAACCTGGT CACGTTGACC CCGTCAGTGG GCGCGCCCTT TATCAGTAAT TTCAACCAGT TCCCTTCGGT TGCGATCAGC GGTTCAGCGG CTGATGGGGC CAGCTCAGGT CAGGCGATGG CGGCAATGGA AGCGCTATTG GCGCAGAATT TACCGCAAGG CTACAGCTAC AGTTGGAGCG GGATGTCATG GCAAGAGCAG CAGACCGGTG GGCAAGTGGC GTTTATTTAT CTTGCGGCGC TGGTATTCGC TTATCTGTTT TTAGTCGCCC AGTATGAAAG CTGGAGTATC CCGCTGGTGG TGGTTCTCTC GGTGGTGTTT GCCGTGGGGG GGGCGGTGGC GGGGCTATCG GCGATGGGGT TTGCCAACGA TGTGTATGCG CAAATAGGCT TAGTGCTACT GATCGGGTTG GCGGCAAAGA ATGCGATTTT GATTGTCGAA TTCTCCAAGG CGCGGCGAGA AGAGGGGGCG AGTATCGCGG AGGCTGCACA GGACGGCGCT AAACAGCGTT TCCGTGCTGT GATGATGACC GCCATTTCGT TTATCCTCGG CGTGATGCCG TTAGTTTTTG CCAGCGGTGC CGGGGCGATG AGCCGCCAGA TTATTGGTAT CACGGTATTT GGCGGCATGT TGATGGCTAC CGCCGTAGGG ATCTTATTTA TTCCGGCGCT GTATCTGCAT ATTCAACGGT TGCGCGAGTG GACAAAAAAC CGCAAGCAGG ATGTTGACGA AAGCCTGTAA
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Protein sequence | MLHFFIRRPK FAIVIALVIT LVGWVSLYVI PVEQYPDITP PVVSVSAVYP GASARDVAQA VASPLEAQVN GVSHMLYMES TSANNGSYQL SITFASGTDP DMAAVEVQNR ISQVSAQLPA EVNENGISVR KRASNLLLGV SVFSPQQTHD ALFVSNYTSI QLRDAIARIS GVGDVQVFGA RDYSMRVWLD PQRMESLNVS VQDIVAALQQ QNVQAAAGQI GSSPSMPNQQ QTLTISGQGR LTDARQFADV IIRSNPQGGM IRLGDVARVA LGAQNYQVSA AQNQTESAFL VVYPVPGANA LNVANGVRDE MARLSAAFPA DLTYEINYDS TLPVTATLHE IAVSLTLTLI VVLAVVYLFL QSLRATFIVA LTVPVSLLGT FAVLYVFGYS ANTLSLFAII LALTIVVDDA IVVVENVERL LSNDPHLSPA EATRQAMSQI AGPIIATTLV LMAVFVPIAI LPGIIGELYR QFAVTLSAAV ILSSINALTL SPALCAVLLK RRTLATTGMF GTINKGLDRA RDGYVGLTGR INRRAVFSIA ALLLVGLATW WGYSRLPTSF LPEEDQGYFF VSLQLPDGAS LNRTQTVMDQ MYQQVSTNDA VEDVIKITGF SLLSGNNAPN AGFAIVMLKP WGQRPHIDRV LASIQANLAA IPSAMIMAVN PPAIAGLGSA SGFDLRIQAL LGQSPQELAQ VSQGIIFAAN QDPTLSRVFT TFSASVPETN LSIDRDRAAL LQVPVSRIFQ TLQTSLGGMN AGDFTLNNRM FRVQLQNDMN FRQRTAQINN LNVRSDNGAL VSLANLVTLT PSVGAPFISN FNQFPSVAIS GSAADGASSG QAMAAMEALL AQNLPQGYSY SWSGMSWQEQ QTGGQVAFIY LAALVFAYLF LVAQYESWSI PLVVVLSVVF AVGGAVAGLS AMGFANDVYA QIGLVLLIGL AAKNAILIVE FSKARREEGA SIAEAAQDGA KQRFRAVMMT AISFILGVMP LVFASGAGAM SRQIIGITVF GGMLMATAVG ILFIPALYLH IQRLREWTKN RKQDVDESL
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