| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpsIP31758_0441 |
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| Symbol | rpoN |
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| ID | 5386750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis IP 31758 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009708 |
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| Strand | - |
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| Start bp | 517179 |
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| End bp | 518612 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640863410 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001399434 |
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| Protein GI | 153949825 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCAAG GTCTGCAACT CAAGTTCAGC CAACAACTGG CGATGACTCC GCAGCTTCAG
CAAGCTATTC GCTTGTTGCA ACTTTCGACG CTTGAACTCC AGCAGGAGAT TCAGCTCGCG
CTGGAGAGCA ACCCCCTTCT TGAGCAAACG GACCTTCATG AAGAGATAGA TGCTAAGGAA
ACCGTGGACA GTGAATCGCT GGATACCCGC GAAGCACTAG AACAAAAGGA TATGCCGGAA
GAATTACCGC TAGATGCCAC CTGGGATGAG ATTTACACCG CAGGTACCCC ATCCGGCATG
GGCAATGATT ACAGTGACGA TGAACTGCCC GTCTATCAGG GTGAAACCAC CCAAACACTG
CAAGACTATC TGATGTGGCA GGTGGATTTA ACACCGTTCA CTGAGACCGA CGCCGCCATT
GCGACTTCTA TCGTTGACGC TGTTGATGAC ACTGGCTATC TCACTGTGCC GCTGGAAGAT
ATTCTGGAAA GCATGGGTGA TGAGAACGTA GCGCTAGACG AAGTGGAAGC GGTACTCAAA
CGTATTCAGC ATTTTGATCC CATCGGTGTC GCTGCCCGTA ACTTGCGCGA ATGCTTACTG
GTACAGTTAT CACAATATGC CAAAGACACC CCTTATTTGG CCGAAGCGCG TCTGATCGTC
AGCGAATATT TAGATTTGCT AGGCAACCAT GATTTCCGCA TGATGATCCG CTTGAGTCGG
CTGAAAGAAG ATACACTTAA AGAAGCCATC GCGCTGATCC AATCACTGGA TCCACGGCCA
GGTCAGTCGA TCAATACCGG GGAGTCTGAG TATGTCATCC CGGATGTTCT GGTTCGTAAA
GAGAAAGGTA TCTGGACGGT GGAGCTGAAT GCCGATAGCA TCCCACGTCT AAAAGTTAAC
CAACAATACG CAGCGATGGG CAATAGCGTC CGTAATGACA GTGACGGGCA GTTTATCCGT
AGCAATTTGC AAGAAGCAAA ATGGTTGATC AAAAGCCTTG AAAGCCGCAA CGAAACGCTG
CTAAAAGTAG CAAGATGTAT TGTAGAACAG CAAGTCGAGT TCTTTGAGAA AGGTGCAGAG
TTTATGAAAC CCATGGTACT GGCTGATATC GCCCAGGCTG TGGATATGCA TGAATCAACA
ATCTCTCGAG TGACCACGCA GAAATTCTTG CACAGTCCCC GAGGGATTTT TGAACTGAAG
TATTTCTTCT CTAGCCACGT CAATACCGAT AGTGGGGGCG AAGCCTCTTC TACGGCGATC
CGGGCGCTGG TGAAGAAATT AGTGGCGGCA GAAAACCCTG CCAAGCCATT AAGCGATAGT
AAACTAACCA CTTTATTATG TGAACAAGGC ATTATGGTAG CACGGCGCAC CGTCGCAAAA
TACCGAGAGT CGTTATCCAT CCCTCCGTCT AATCAACGTA AACAGTTGGT TTGA
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| Protein sequence | MKQGLQLKFS QQLAMTPQLQ QAIRLLQLST LELQQEIQLA LESNPLLEQT DLHEEIDAKE
TVDSESLDTR EALEQKDMPE ELPLDATWDE IYTAGTPSGM GNDYSDDELP VYQGETTQTL
QDYLMWQVDL TPFTETDAAI ATSIVDAVDD TGYLTVPLED ILESMGDENV ALDEVEAVLK
RIQHFDPIGV AARNLRECLL VQLSQYAKDT PYLAEARLIV SEYLDLLGNH DFRMMIRLSR
LKEDTLKEAI ALIQSLDPRP GQSINTGESE YVIPDVLVRK EKGIWTVELN ADSIPRLKVN
QQYAAMGNSV RNDSDGQFIR SNLQEAKWLI KSLESRNETL LKVARCIVEQ QVEFFEKGAE
FMKPMVLADI AQAVDMHEST ISRVTTQKFL HSPRGIFELK YFFSSHVNTD SGGEASSTAI
RALVKKLVAA ENPAKPLSDS KLTTLLCEQG IMVARRTVAK YRESLSIPPS NQRKQLV
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