Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0402 |
Symbol | cafA |
ID | 5386410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 462178 |
End bp | 463647 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640863371 |
Product | ribonuclease G |
Protein accession | YP_001399395 |
Protein GI | 153949561 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.124199 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGCTG AATTACTGGT CAATATTACA CCGTCTGAAA CGCGTGTTGC TTATATTGAT GGCGGCATCC TGCAAGAAAT ACATATCGAG CGTGAAGCCA AAAGAGGGAT CGTTGGCAAT ATTTATAAAG GGCGAGTCAG CCGGGTTTTA CCGGGTATGC AAGCTGCTTT TGTTGACATA GGTCTGGATA AAGCCGCTTT CCTCCATGCT TCCGATATCA TGCCCCACAC CGAATGCGTG GCCGGGGATG AACAGAAAAA CTTCAATGTG CGCGATATCG CCGAACTGGT CCGTCAGGGG CAGGATTTAA TGGTACAAGT GGTGAAAGAT CCCTTGGGTA CCAAAGGCGC ACGTTTGACG ACCGATATTA CTCTTCCTTC TCGCTATCTG GTGTTAATGC CCGGAGCTGC CCATGTTGGG GTTTCCCAGC GGATTGAAAG TGAAGCAGAG CGCGAACGCC TAAAAAAGAC GGTTGCGGCT TACTGTGATG AGCAGGGCGG TTTTATTATT CGTACTGCCG CTGAAGGGAT TGGCGAAGAA GAGCTATCCG CTGATGCCGC GTTCCTTAAA CGTTTGTGGA CCAAAGTTCA GGAGCGTAAG AAGCGTAATA TCACCAAATA TAAGCTGTAT GGTGAAATGG CGCTGGCGCA ACGCGTATTG CGTGATTTTG CTGGTGCGGC GCTGGATAAA ATCCGCGTTG ACTCAAAATT GACTTACGAT TTGCTGGTGG AGTTCACCCG CGAATATATT CCAGAAATGA CGGACAAGCT GGAGCTGTAT ACTGGGAAGC AACCTATTTT CGATCTCTAT GATGTCGAGA ATGAAATTCA GCGCTCTCTG GAGCGTAAAG TTGAATTAAA ATCAGGTGGT TATCTGATTA TCGATCAGAC AGAAGCGATG ACTACCGTGG ATATTAACAC TGGGGCATTT GTCGGGCATC GGAATCTTGA GGAAACCATT TTCAATACCA ATATTGAGGC GACGCAGGCC ATTGCCCGCC AATTGCGGAT GCGTAATCTG GGCGGGATTA TCATTATTGA TTTCATTGAT ATGAGTAATG AAGATCATCG CCGGCGGGTA TTGCATTCAT TGGAACAAGC ACTGAGTAAA GATCGCGTAA AAACCAGTAT TAACGGCTTC TCCCAGCTAG GCTTAGTCGA AATGACGCGT AAGCGTACGC GTGAAAGTAT TGAGCATGTT TTATGCCATG AATGCCCAAC CTGCCGTGGC CGTGGCACGG TAAAATCCGT AGAGACCGTG TGCTACGAAA TCTTGCGTGA AATTGTCCGT GTTCATCATG CTTATGATTC TGACCGTTTC TTGGTCTATG CTTCTCCGGC TGTAGGTGAG GCGCTGAAAG GCGAAGAGTC TCATGCACTG GCCGAGGTGG AAATCTTCGT CGGTAAGCAG GTAAAAGTTC AGATAGAGCC ACTGTATAAC CAAGAACAGT TTGACGTGGT GATGATGTAA
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Protein sequence | MTAELLVNIT PSETRVAYID GGILQEIHIE REAKRGIVGN IYKGRVSRVL PGMQAAFVDI GLDKAAFLHA SDIMPHTECV AGDEQKNFNV RDIAELVRQG QDLMVQVVKD PLGTKGARLT TDITLPSRYL VLMPGAAHVG VSQRIESEAE RERLKKTVAA YCDEQGGFII RTAAEGIGEE ELSADAAFLK RLWTKVQERK KRNITKYKLY GEMALAQRVL RDFAGAALDK IRVDSKLTYD LLVEFTREYI PEMTDKLELY TGKQPIFDLY DVENEIQRSL ERKVELKSGG YLIIDQTEAM TTVDINTGAF VGHRNLEETI FNTNIEATQA IARQLRMRNL GGIIIIDFID MSNEDHRRRV LHSLEQALSK DRVKTSINGF SQLGLVEMTR KRTRESIEHV LCHECPTCRG RGTVKSVETV CYEILREIVR VHHAYDSDRF LVYASPAVGE ALKGEESHAL AEVEIFVGKQ VKVQIEPLYN QEQFDVVMM
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