Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpsIP31758_0397 |
Symbol | |
ID | 5386694 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis IP 31758 |
Kingdom | Bacteria |
Replicon accession | NC_009708 |
Strand | + |
Start bp | 456601 |
End bp | 458517 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640863366 |
Product | regulatory protein CsrD |
Protein accession | YP_001399390 |
Protein GI | 153949170 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 0.793153 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGATTTA CCACCAAACT TTCTGCGTTT ATGACGCTGC TGGTCGTATT GGCTATGTGT TTAGTCTTAT TGGGCAGCAC GATCAGCTTC TTCTATTTGT GCCAGAAGAA AATGGAACAA CGGCTCCAAA GTATTGTGAC CGCTTACGAT CAGTCACTGC TGCTGCAACC CATCAATAAA AAACGTGAAT GGCTGCCACT GATGATGCAG ACCCTTGGTG TGGTCGATGT CAGTGTCAAA AATAGCACCA GTACCCTCTA TCAACTCCAC ATTCCTGCAG TTTATACGCC TTGGAACAGC CACAGTCGTT ACCGTCAGAT GGTATTGCCT CTGTTGCATC AGCCAGGGGC GGAGATGCAT TTCAACTATA TTGACCCGTT GGGCAGCTAT GCCCGTTCTA TTTATGCCGC GGCCATTTTA TCGCTGGTGG TGGTGGTCAT TGCGTTAACG TTGTTGTTGA GTTTTCGCTG GCTACGTGAC CAGACGGTGG GGCAGGAAAA ACTTGAACGG CGAGCAAGGC GCATTCTCAA TGGTGAACGT GAGCATGCGG TGCGCAGCGA GGATTACGAA TGGCCACCTT GTGCCAGCAG GGCTATTGAC CATTTATTAT CTGAGTTGAT GGAGGTGCGG GCAGAACGCA ATCGGGTAGA TACGTTAATC CGCACGTTTG CGGCTCAAGA TGCTCAGACT GGCCTCAGTA ACCGTCAGTT TTTTGATAAC CAACTGACCA CACAACTTGA AGAGACCGGC GCGCACGGCG TGGTCATGAT GGTGCAACTG CCCGATTTTG AAGCCTTAAA TGAAACGCAT GATCAGCAGC AAGTACAGGA ATTGATGAGT TCACTGGTTA ACCTGCTGTC AACTTTTGTG GCCCGCTACC CCTCAGCACT CTTGGCCCGC TACCTTAATA GTGACATCGC GATATTACTG CCCCACAAAA CCCTGAAAGA TGCCGATGTG ATGGCCGCAC AGTTGGTGAA TGCGGTGAGA ACCTTACCGG AGCCTCATAT TATTGATCGC GAATCACTGT TGCATATTGG CATCGTGGCT TACCGGAGTG GTGAGTCAGT CGAACAAATT ATGGACAATG CCGGGCAGGC GACCAAAAGT GCGGCGCTGT ATGGTGGCAA CGGTTGGTAT GTGTTCGACA CTCAGGTACC AGAGCGCGGG CGTGGCAGTG TTAAATGGCG CACATTACTG GAACAGACTC TGGCGAGCGG AGGCCCAAGG CTTTATCAAA AACCCGTTAT TACTGTTGAT GGCAAAATAA GCCATCGTGA AATAATTAGC CGCATATATG ATGGTGAGCA GGAGCTACTG GCGGCCGAGT TTATGCCCTT GGTACAATTG CTCGGATTGG GTGAACGTTA TGATCGGCAA AAGATTGATA AGATAATTCC TTTATTATCT TTATGGCCGG ATGAAACGCT GGCATTTTCT ATCAGCGTTG ATTCATTATT ACATCGTCCT TTCCAGCGCT GGTTGCGTGA CACGCTATTA CAGTGCAAAA AATCTGACCG AATGCGAATT ATCTTTGAAC TTGCAGAGGC AGATGTGTGT CAACATATCG AAGAAATCCG CCAAATGGTC CGTTTATTGC GTGGCGTAGG CTGCAAAGTG ATGGCATCAC AGGCTGGATT GACGGTTGTC AGCACCTCAT ATATTAAGTC TTTGCAGGTT GAAATGATAA AGCTTCATCC CGGTGTGGTA AGAAGCATTA ATTTTCGCTA TGAAAACCAG TTATTTGTAG AAAGTCTGAC CGGTGCCTGT GCAGGGACGC AGACGAAAGT TTTTGCGGCA GAAGTGCGTA CCCGTGAAGA ATGGCAAACG CTGCAAGAGA AAGGCGTTTA CGGCGGACAG GGCAATTTCT TTGCTCCACC GACCCCATTA AACTCCGGAA AGAAAAAATA TTCGTAA
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Protein sequence | MRFTTKLSAF MTLLVVLAMC LVLLGSTISF FYLCQKKMEQ RLQSIVTAYD QSLLLQPINK KREWLPLMMQ TLGVVDVSVK NSTSTLYQLH IPAVYTPWNS HSRYRQMVLP LLHQPGAEMH FNYIDPLGSY ARSIYAAAIL SLVVVVIALT LLLSFRWLRD QTVGQEKLER RARRILNGER EHAVRSEDYE WPPCASRAID HLLSELMEVR AERNRVDTLI RTFAAQDAQT GLSNRQFFDN QLTTQLEETG AHGVVMMVQL PDFEALNETH DQQQVQELMS SLVNLLSTFV ARYPSALLAR YLNSDIAILL PHKTLKDADV MAAQLVNAVR TLPEPHIIDR ESLLHIGIVA YRSGESVEQI MDNAGQATKS AALYGGNGWY VFDTQVPERG RGSVKWRTLL EQTLASGGPR LYQKPVITVD GKISHREIIS RIYDGEQELL AAEFMPLVQL LGLGERYDRQ KIDKIIPLLS LWPDETLAFS ISVDSLLHRP FQRWLRDTLL QCKKSDRMRI IFELAEADVC QHIEEIRQMV RLLRGVGCKV MASQAGLTVV STSYIKSLQV EMIKLHPGVV RSINFRYENQ LFVESLTGAC AGTQTKVFAA EVRTREEWQT LQEKGVYGGQ GNFFAPPTPL NSGKKKYS
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