Gene YpAngola_A3892 details

Gene Information

• Locus tag: YpAngola_A3892
• Symbol: hasD
• ID: 5802370
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pestis Angola
• Kingdom: Bacteria
• Replicon accession: NC_010159
• Strand: -
• Start bp: 4129726
• End bp: 4131534
• Gene Length: 1809 bp
• Protein Length: 602 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641341683
• Product: ABC transporter
• Protein accession: YP_001608193
• Protein GI: 162419728
• COG category: [R] General function prediction only
• COG ID: [COG4618] ABC-type protease/lipase transport system, ATPase and permease components
• TIGRFAM ID: [TIGR01842] type I secretion system ABC transporter, PrtD family

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 39
• Fosmid unclonability p-value: 0.881504
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAATCTT GCAAAACGCC CGGAGCTTCA TCGGTACCGC CAACAATTCT GTCGGTTCTG 
GCGGGTAATA AAAAAATCCT CTGGGGCATC GGGCTATTTA CTGCCGTAAT AAACTTGCTG 
ATGTTGGCAC CGGCCATTTA TATGCTGCAA GTGTATGATC GCGTCCTCGC CTCAGCGAAT 
ACCATGACAT TATTGATGCT CACTGTTCTG GTGCTGGGCG TATTTGTTTT TATTGGTTTA 
TTAGAATGGG TTCGCAGTGC AGTAGTGATT CGCTTGGGGA CTCAGATTGA TATGCAACTC 
AATCAGCCGG TCTTTAACGC GGCCTTTGCC GCCAATCTTA AGGGACATAA CACGCCAGCC 
GCGCAAGCGC TAAATGACCT GACAGTGTTA CGCCAGTTTG CCACCGGTAA TGCGTTATTT 
GCCTTTTTTG ATGCACCTTG GTTCCCGCTT TATTTGCTGG TAATTTTTTT GCTTCATCCG 
TGGCTGGGGA TGCTGGCCGC CGCAGGCGCA GGTATATTGG TTGTTCTCGC TTGGCTCAAT 
CAGTGGATCT GTAAAAAACC ATTACACGAT GCCTCAATTA TCACCTCACA CGCGACACAA 
CAAGCCAATG CTAATTTACG TAATGCGGAT GTCATTGAAG CGATGGGGAT GCTCAAAGCA 
TTACGTGAAC GTTGGTTAAT GCAGCACGCG AATTTTCTCT ACCAACAAAA TCTTGCCAGC 
GATAAAAGTA GCCGGGTGAC GGCGGTCGCT AAATCAAGCC GCCAGGCATT GCAATCGATG 
ATGTTAGGTC TGGGAGCGTT ACTGGTGATT TATAATGAAA TCACGGCTGG CGTGATGATT 
GCCGGGTCAA TTTTAATCGG GCGGGTGCTG GGGCCTATCG ATCAACTTAT TGCAGTCTGG 
AAACAATGGA GCCACGCCCG GCTGGCTTAT CAACGTCTCT CCCAATTACT GGCGCAGCAC 
CCATCATCAC CCACCGGCAT GGTTTTGCCT GCTCCACAGG GGAAACTGAA CGTTACGCAA 
CTTATGGCCT GCAAGCCGGG CACGCACATT CCAGTATTAC ACTCCATCAA CTTTGAACTG 
CAACCCGGTG ATGTGCTAGG TATTTTGGGG CCATCAGGCA GTGGTAAATC TACGCTGGCA 
AAACTCTTGG TCGCCAGCCA GCCCACATTC AGCGGAACAG TGCGTTTAGA TAGCGCAGAC 
CTTTCTCGTT GGGATAAAAC GCAGTTAGGG GAATTTATCG GTTACCTGCC ACAAAATATT 
CAGCTATTCC GCGGCACTGT TGCTGAAAAT ATTGCACGTT TTGGCGCTAT TGATACCGCA 
AAAGTGGTCG CAGCTGCACA GTTGGCAGAT GTACACGATT TAATTCTGCA TTTGCCGCAA 
GGGTATGACA CCCCGTTAGG TGACGACGGC GAGGGGTTAT CCGGTGGTCA ACGTCAACGT 
ATCGCCTTAG CTCGGGCAAT GTACGGAATA CCTCGGCTTA TCGTATTGGA TGAACCCAAT 
GCCAGTTTGG ATAAAGAAGG GGAGCAAGCC TTATTAGCCA GTATTATCCA GCTAAAACAA 
CAAGGTTGCA CCATCGTGAT GATCACCCAT AAACCAGAGC TGTTATCTGG CAGTGACTAT 
TTGCTGTTTT TAAAGAATGG GCAAATGGAT CTATTTGATC GTACTCAGGC GGTCTTACAG 
AACATTCAGG GTAAGGATAA GCCTGCTGTG CAACCTGAAA CGAAAATACT GAATAGCCGA 
AGCGGTTGGA GCAACGGTGT GTCATATGGC ATCGGGCCGG CTCGTACTAC ATCATCACCG 
AAGCCATGA 

 

Protein sequence

MESCKTPGAS SVPPTILSVL AGNKKILWGI GLFTAVINLL MLAPAIYMLQ VYDRVLASAN 
TMTLLMLTVL VLGVFVFIGL LEWVRSAVVI RLGTQIDMQL NQPVFNAAFA ANLKGHNTPA 
AQALNDLTVL RQFATGNALF AFFDAPWFPL YLLVIFLLHP WLGMLAAAGA GILVVLAWLN 
QWICKKPLHD ASIITSHATQ QANANLRNAD VIEAMGMLKA LRERWLMQHA NFLYQQNLAS 
DKSSRVTAVA KSSRQALQSM MLGLGALLVI YNEITAGVMI AGSILIGRVL GPIDQLIAVW 
KQWSHARLAY QRLSQLLAQH PSSPTGMVLP APQGKLNVTQ LMACKPGTHI PVLHSINFEL 
QPGDVLGILG PSGSGKSTLA KLLVASQPTF SGTVRLDSAD LSRWDKTQLG EFIGYLPQNI 
QLFRGTVAEN IARFGAIDTA KVVAAAQLAD VHDLILHLPQ GYDTPLGDDG EGLSGGQRQR 
IALARAMYGI PRLIVLDEPN ASLDKEGEQA LLASIIQLKQ QGCTIVMITH KPELLSGSDY 
LLFLKNGQMD LFDRTQAVLQ NIQGKDKPAV QPETKILNSR SGWSNGVSYG IGPARTTSSP 
KP