| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A3524 |
|---|
| Symbol | |
|---|
| ID | 5802000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pestis Angola |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010159 |
|---|
| Strand | + |
|---|
| Start bp | 3746071 |
|---|
| End bp | 3748707 |
|---|
| Gene Length | 2637 bp |
|---|
| Protein Length | 878 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641341340 |
|---|
| Product | hemagglutination repeat-containing protein |
|---|
| Protein accession | YP_001607853 |
|---|
| Protein GI | 162418354 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
|---|
| COG ID | [COG5295] Autotransporter adhesin |
|---|
| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.20838 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTA TCCAAAAGTG TGACTGTAAT TATCTGGTCA GATTTGCAGT TTCAGATTCC
TTTATCAGAG ACAATTCTTT TCGCAGCTTG CTTGCTATTT TTATGGTGAC GATATTTGTG
CCAAATACTG CATTTTCTCA ACTCTATGTG AACAATGCCA ATGATCCTGG CTGTTATGTC
ATTGCTGATG GGGGGTTTAC GGGTGTTACT AATAGTGATC AAAATTGTTA TACGTTGTCT
TTGAATAATA TTAATACCAA TGGGGGGCAG CTATTTGTTG GTGGAAAAGG TGGGATCGCT
GGGAAGCCTA GCTTTATCGC CACCCCTTGG ACAGGGACAT TCACGACGGC CGTTGGCACC
AGTAATGTCG CCACAGCATA CGGCTTTGTC GTTCAAAGCA ATGGTGCATT TATCAACGGT
GATACCTACG TGAAGGGGGG GTTATTTTTG AACGGTAGGA AAGCCACCAA TCTTGCCCCC
GCAACGATTT CATCGACCTC CACCGATGCG GTGGTTGGTA GCCAGCTTTA TACGGTGATC
CAAGATGGAA CCCGCTATTT CCACGCCAAC TCAGTGAACC CGCAAGACTC CGTGCCTGCG
GGTCAGGATG CTATTGCTGT CGGGCCGGCG ACGGTGGTCA ATGGTAATAA CGGGATTGGT
ATTGGTAGTA GCGCCGTTGT TGGGCCGAGT GCTGTCGGGG GCATTGCAAT TGGCCCCAAC
ACTCAGGCGA CCGGTATCGC CAGCACGGCC CTTGGTGCCG GGTCGCAAGC GCATGGATCA
CAGTCTTTGG CATTGGGGGC GGGAGCAACT GCCAGCCAGG CAAACAGTAT CGCGTTAGGG
GCGTCGTCGG TCACCACGGT CGGTGCTGAG AGCGACTACA GTGCGTACGG ACTGACGGCT
CCCCAAACGT CGGTGGGCGA GGTGGGGATG GGCACGGCAC AGGGGAATCG CAAGATCACC
GGTGTGGCAG CCGGTTCGGC TGATTATGAT GTGGTCAATG TCGCGCAATT GACCGCTGTT
GGTGACAAGG TCGAGCAGAA TACCGCCGAC ATTACCAGTT TGGGTGGCCG GGTCACCAAT
GTTGAGGGGG GGATGACCCG TATCACCAAC GGGGGCGGTA TAAAGTACTT CCACACTCAC
TCCACCGAGC CTGATTCGGT GGCCAGCGGC AGTGATTCGG TGGCGATCGG ACCGAATGCG
CAGGCGTCCG GTACCACGTC GATAGCCATG GGGGCCGGGT CGACAGCGCA GGGAGCACAG
TCTCTGGCAT TGGGGGCGGG AGCGGCTGCC AGCCAGGCAA ACAGTATTGC ATTAGGGGCG
TCGTCGGTCA CCACGGTCGG TGCTGAGAGC GACTACAGTG CGTACGGACT GACAGCTCCC
CAAACGTCGG TGGGCGAGGT GGGGGTGGGC ACGGCACAGG GGAATCGCAA GATCACCGGT
GTGGCAGCCG GTTCGGCTGA TTATGATGCG GTCAATGTCG CGCAATTGAC CGCTGTTGGT
GACAAGGTCG ATCAGAATAC CGCTGACATC ACCAGCTTAG ACGGCCGGGT CACCAATGTT
GAGGGGGAGA TGGCCAGCAT CACCAACGGG GGCGGCGTGA AATACTTCCA CACCCACTCC
ACCGAGTCTG ACTCGGTGGC CAGCGGCAGT GATTCGGTGG CGATCGGACC GAATGCGCAG
GCGTCAGGTA CGGCTTCGGT GGCCTCCGGC AAGGGTACGC TGGCCTCCGG TAACGGTGCG
GTGGCGATAG GTGATGCAGC AAGCGTCAGC GCAGAGGGCA GTGTTGCCCT GGGGCAGGGT
TCCGCTGACA ACGGGCGCGG TGCAGAGAGC TACACCGGCA AGTACTCCAC TACGGATAAC
ACCACCTCAG GTACGGTGTC GGTGGGCAAT GCGGCAACCG GAGAGACCCG GACGGTCAGC
AACGTTGCCG ACGGGCGAGA GGCCATGGAT GCAGTCAATC TGCGGCAACT CGATGGTGCA
ATGGCGGCGG TGGGTGACAC CGTATCAGGG TTGCAGAACG GCACTGACGG GATGTTCCAG
GTGAACAACA ACAGCGGTCA GGCCAAGCCT TCGGTCACCG GAACTGATGC GATGGCGGGG
GGGGGGGGGG CAGGCTCCGT GGCGTCTGGC AGCCACAGTA CCGCGATGGG TACGGGCAGC
AAGGCGACGG CGGCAAACAG CACCGCGCTG GGGGCCAACT CAGTGGCGGA TCGTGAAAAC
AGTGTCTCGG TGGGGTCAGT GGGTAATGAA CGGCAGCTCA CTAATATTGC TGTGGGGACT
CAGGGCACTG ATGCGGTGAA TCTGGATCAA CTCAACCATA GCATGTCGAA TGTCACCAAC
GACGCCAATG CTTATACAGA CCAGCGCTAT TCTGCACTTA AAGAAGATCT GAAAAAACAG
GATAGTACGT TAAGTGCGGG GATCGCCGGT GCCATGGCGA TGGCGAGCCT GACTCAACCC
TATACGCCGG GTGCCAGCAT GGCGACCATT GGTGCGGCCA GCTATCGGGG CCAGTCGGCG
CTGTCGGTGG GGGTGTCGAG TATTTCTGAC AGTGGGCGAT GGGTCAGCAA ATTGCAGGCC
TCCTCTAATA CACAAGGCGA TATGGGGGTT GGTGTCGGCG TCGGTTATCA ATGGTAA
|
|---|
| Protein sequence | MKSIQKCDCN YLVRFAVSDS FIRDNSFRSL LAIFMVTIFV PNTAFSQLYV NNANDPGCYV
IADGGFTGVT NSDQNCYTLS LNNINTNGGQ LFVGGKGGIA GKPSFIATPW TGTFTTAVGT
SNVATAYGFV VQSNGAFING DTYVKGGLFL NGRKATNLAP ATISSTSTDA VVGSQLYTVI
QDGTRYFHAN SVNPQDSVPA GQDAIAVGPA TVVNGNNGIG IGSSAVVGPS AVGGIAIGPN
TQATGIASTA LGAGSQAHGS QSLALGAGAT ASQANSIALG ASSVTTVGAE SDYSAYGLTA
PQTSVGEVGM GTAQGNRKIT GVAAGSADYD VVNVAQLTAV GDKVEQNTAD ITSLGGRVTN
VEGGMTRITN GGGIKYFHTH STEPDSVASG SDSVAIGPNA QASGTTSIAM GAGSTAQGAQ
SLALGAGAAA SQANSIALGA SSVTTVGAES DYSAYGLTAP QTSVGEVGVG TAQGNRKITG
VAAGSADYDA VNVAQLTAVG DKVDQNTADI TSLDGRVTNV EGEMASITNG GGVKYFHTHS
TESDSVASGS DSVAIGPNAQ ASGTASVASG KGTLASGNGA VAIGDAASVS AEGSVALGQG
SADNGRGAES YTGKYSTTDN TTSGTVSVGN AATGETRTVS NVADGREAMD AVNLRQLDGA
MAAVGDTVSG LQNGTDGMFQ VNNNSGQAKP SVTGTDAMAG GGGAGSVASG SHSTAMGTGS
KATAANSTAL GANSVADREN SVSVGSVGNE RQLTNIAVGT QGTDAVNLDQ LNHSMSNVTN
DANAYTDQRY SALKEDLKKQ DSTLSAGIAG AMAMASLTQP YTPGASMATI GAASYRGQSA
LSVGVSSISD SGRWVSKLQA SSNTQGDMGV GVGVGYQW
|
|---|
| |