| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YpAngola_A2864 |
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| Symbol | mfd |
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| ID | 5801336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pestis Angola |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010159 |
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| Strand | + |
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| Start bp | 3006055 |
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| End bp | 3009501 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641340715 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001607245 |
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| Protein GI | 162421681 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0829666 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCAAC AATATCGTTA TTCATTGCCT GAACGACGTG GTGATACCCG TCAGTTAGGC
CAGTTGACCG GATCAGCCTG TGCGGTCGAA TGTGCCGAAA TCATTGAACG CCATGATGGC
CCGGTAATGC TGATTACCCC CGATATGCAA ACGGCCTTGC GCTTGCGTGA TGAGATCCAG
CAATTCTCGC CACAACCCGT AAGTACCCTC TCCGATTGGG AAACGCTGCC TTACGATAGC
TTCTCGCCAC ATCAGGATAT TATTTCGGCC CGCCTCTCTT GTTTGTATCA TCTTCCGGCA
ATGAAACGCG GTGTCATTAT TCTCCCAATT AATACCCTGA TGCAACGAGT GTGCCCACAC
GAATTTCTAC ATGGCCACGC TTTGGTGATG AAAAAAGGCC AGCACTTGTC ACGGGATAAG
TTACGCGCCC AACTTGAGCA AGCGGGCTAT CGCAGTGTTG AACAGGTCAT GGAGCACGGT
GAGTTTGCGA CGCGAGGTGC GTTGCTGGAC TTATACCCAA TGGGGAGCAA TGAACCGTAT
CGGATTGATT TTTTTGATGA TGACATTGAT AGCCTGCGGG TATTTGACGT TGATTCGCAA
CGCACACTCG TCGAAGTTGA GCAAATAAAC TTACTGCCAG CACATGAGTT CCCAATAGAT
AAAGCGGCGA TTGAATTATT CCGTAGCCAA TGGCGTGAAC AGTTTGAAGT CCGTCGCGAC
AACGAACATA TTTATCAGCA AGTGAGTAAA GGCATCTGGC CTGCGGGTAT CGAGTATTGG
CAGCCGCTGT TTTTCAGCCA GCAATTACCG ACATTGTTTA GCTATCTGCC TGAAAATACC
TTATTGGTAA ACACCGGAGA TCTGGAAAGC TCGGCTGAAC GCTTCTGGCA GGACGTTAAC
CAACGCTTCG AAAGCCGCCG TGTTGACCCA ATGCGCCCAC TGTTGGCCCC CGAGAGCTTG
TGGCTTCGGG TTGATGCGCT GTTTAATGAA TTAAAAGAGT GGCCGCGTGT TCAGCTTAAA
ACAGAGGCGC AGCCCGCCAA AGCCGCGAAT ACCAATTTAT GTTATCAACC GCTGCCCGAT
TTATCCGTTC AGGCACAACA AAAAGCGCCT CTTGATAATC TGCGTCGCTT TATTGAATCG
TTTCATGGCA GTGTGGTGTT CTCGGTTGAA AGTGAAGGCC GCCGTGAAAC CTTACAAGAC
CTGCTGGCAC GGATAAAACT CAGCCCAACA CTGATCACTA CGCTGTCTCA GGCGGCTAAC
CCCGGCCATT ATCTGATGGT TGGGGCCTCG GAACGTGGCT TCCTCGATAC TGACAAACAA
CTGGCGCTGA TTTGTGAAAG CGACCTACTC GGTGAGCGTG TCAGCCGTCG CCGGCAAGAT
AACCGGCGGA CCATCAACAC CGATACGTTG ATCCGTAATT TGGCAGAACT CCGCCCCGGC
CAGCCGGTAG TCCATCTGGA ACACGGTGTC GGCCGCTATC TGGGACTAAC CACCCTTGAA
GCGGGTGGGA TAAAGGCTGA ATACCTGATA TTGACTTACG CCGGTGAAGA TAAACTGTAT
GTCCCCGTGT CATCATTGCA TCTCATTAGC CGCTATTCAG GGGGTGCGGA CGATAACGCC
CCGTTGCATA GGTTAGGCAG CGATGTCTGG AGCCGGGCAC GGCAAAAAGC CGCCGAGAAA
GTGCGGGATG TTGCTGCTGA ACTGCTGGAT ATCTATGCCC AGAGGGCGGT TAAATCTGGC
TTTAAATTTA AGCATGACCG TGAGCAATAC CAGCTGTTCT GCCAAAGCTT CCCGTTTGAA
ACCACGCCAG ATCAAGAGCA GGCGATCAAC GCGGTGCTCA GTGATATGTG CCAACCGTTA
GCCATGGACC GCTTGGTTTG TGGTGATGTG GGCTTTGGTA AAACGGAAGT GGCGATGCGG
GCCGCATTTC TGGCCGTTAC CAATAATAAA CAAGTGGCGG TGTTGGTACC CACCACCCTG
CTGGCTCAAC AGCATTTTGA TAATTTCCGT GACCGCTTTG CCACTTGGCC GGTACGGATT
GAGATGCTAT CCCGTTTTCG CAGTGCCAAA GAGCAGCAAG TCATTCTGGA ACAAGCCGCT
GAAGGCAAAA TCGATATCCT TATCGGTACC CATAAATTGC TGCAAAGCGA TCTGCATTGG
CACGATCTCG GCCTGCTGAT TGTGGATGAA GAACACCGCT TCGGCGTGCG TCATAAAGAG
CGGATCAAAG CGATGCGGGC TGATGTTGAT ATCCTGACCC TGACGGCCAC GCCAATCCCA
CGGACACTGA ATATGGCGAT GAGTGGCATG CGTGACTTAT CGATTATCGC CACCCCTCCG
GCACGGCGTC TGGCGGTAAA AACCTTTGTC CGCGAATACG ATAGCCTGGT GATCCGTGAA
GCCATATTGC GTGAAATCCT GCGCGGTGGG CAAGTCTATT ACCTGTACAA CGATGTGGAG
AATATCGAAA AAGTCACGCA GAAACTGGCT GAATTAGTCC CTGAGGCTCG GATAACCATC
GGCCATGGTC AAATGCGTGA ACGGGATTTG GAACGGGTGA TGAATGATTT CCACCATCAA
CGCTTCAATG TGCTGGTCTG TACCACCATT ATTGAAACCG GTATTGATAT TCCCAGCGCC
AATACCATTA TTATTGAGCG AGCGGATCAC TTGGGTCTAG CGCAGTTGCA CCAGCTCAGA
GGCCGGGTCG GGCGCTCTCA CCATCAGGCT TATGCCTACT TGCTGACCCC CAATCCAAAA
GCCATGAGCA CCGATGCGAA GAAACGGCTG GAAGCCATTG CGTCACTGGA AGATCTCGGT
GCAGGTTTTG CATTGGCGAC ACATGATTTG GAAATCCGTG GTGCCGGGGA GCTATTGGGC
GAGGACCAAA GCGGCCAGAT GACCACGATT GGCTTCTCGT TGTATATGGA GCTACTGGAA
AGTGCCGTAG ATGCGCTAAA AGAGGGCCGT GAGCCTTCAT TAGAAGACCT GACCAGCAAC
CAAACCGAAA TAGAAATGCG CATGCCGGTG CTGCTGCCAG AGGATTTCAT TTCAGATGTG
AATATCAGGC TGTCGTTCTA TAAACGTATC GCCAGTGCGC GCAACGAAAC CGAGCTGGAT
GAGTTAAAAG TTGAGCTAAT CGATCGCTTT GGCAAGTTAC CCGACCCCGC CCGCTATTTA
TTGCATACCG CCGAATTGCG TCAACAAGCC CAGAAACTGG GTATCAAACG TATTGAAGGC
AATGAGCGTG GCGGTTTCAT TGAGTTTGGC GAGAACAATA AAGTGGATCC GGTGTATTTG
ATTGGGCTGT TACAACGGCA ACCACAGATT TACCGTTTGG AAGGGCCAAC CAAATTGAAG
TTGGTGCAAG ATTTAAGTGA TCGGGCGCAA CGGTTGAAAT TTATTACGGA GTTACTGGCG
GCATTTGCAC AACATCGCAT TGCCTAG
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| Protein sequence | MSQQYRYSLP ERRGDTRQLG QLTGSACAVE CAEIIERHDG PVMLITPDMQ TALRLRDEIQ
QFSPQPVSTL SDWETLPYDS FSPHQDIISA RLSCLYHLPA MKRGVIILPI NTLMQRVCPH
EFLHGHALVM KKGQHLSRDK LRAQLEQAGY RSVEQVMEHG EFATRGALLD LYPMGSNEPY
RIDFFDDDID SLRVFDVDSQ RTLVEVEQIN LLPAHEFPID KAAIELFRSQ WREQFEVRRD
NEHIYQQVSK GIWPAGIEYW QPLFFSQQLP TLFSYLPENT LLVNTGDLES SAERFWQDVN
QRFESRRVDP MRPLLAPESL WLRVDALFNE LKEWPRVQLK TEAQPAKAAN TNLCYQPLPD
LSVQAQQKAP LDNLRRFIES FHGSVVFSVE SEGRRETLQD LLARIKLSPT LITTLSQAAN
PGHYLMVGAS ERGFLDTDKQ LALICESDLL GERVSRRRQD NRRTINTDTL IRNLAELRPG
QPVVHLEHGV GRYLGLTTLE AGGIKAEYLI LTYAGEDKLY VPVSSLHLIS RYSGGADDNA
PLHRLGSDVW SRARQKAAEK VRDVAAELLD IYAQRAVKSG FKFKHDREQY QLFCQSFPFE
TTPDQEQAIN AVLSDMCQPL AMDRLVCGDV GFGKTEVAMR AAFLAVTNNK QVAVLVPTTL
LAQQHFDNFR DRFATWPVRI EMLSRFRSAK EQQVILEQAA EGKIDILIGT HKLLQSDLHW
HDLGLLIVDE EHRFGVRHKE RIKAMRADVD ILTLTATPIP RTLNMAMSGM RDLSIIATPP
ARRLAVKTFV REYDSLVIRE AILREILRGG QVYYLYNDVE NIEKVTQKLA ELVPEARITI
GHGQMRERDL ERVMNDFHHQ RFNVLVCTTI IETGIDIPSA NTIIIERADH LGLAQLHQLR
GRVGRSHHQA YAYLLTPNPK AMSTDAKKRL EAIASLEDLG AGFALATHDL EIRGAGELLG
EDQSGQMTTI GFSLYMELLE SAVDALKEGR EPSLEDLTSN QTEIEMRMPV LLPEDFISDV
NIRLSFYKRI ASARNETELD ELKVELIDRF GKLPDPARYL LHTAELRQQA QKLGIKRIEG
NERGGFIEFG ENNKVDPVYL IGLLQRQPQI YRLEGPTKLK LVQDLSDRAQ RLKFITELLA
AFAQHRIA
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