Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YpAngola_A1023 |
Symbol | speE |
ID | 5799486 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pestis Angola |
Kingdom | Bacteria |
Replicon accession | NC_010159 |
Strand | + |
Start bp | 1045434 |
End bp | 1046324 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641339012 |
Product | spermidine synthase |
Protein accession | YP_001605584 |
Protein GI | 162420219 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0421] Spermidine synthase |
TIGRFAM ID | [TIGR00417] spermidine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 72 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACAGA AAGAACTATG GTATGAAACA TTACATGCCA ACTTCGGCCA GTACTTTTCT GTTGAGAATG TATTGTTCCG CGAAAAAACC GAGCATCAGG ACCTGGTGAT TTTTGAAAAC CCAGAGTTGG GCCGCGTAAT GGCATTAGAT GGTGTGGTGC AAACGACAGA GCGTGATGAG TTTATCTACC ACGAAATGAT GACACACGTT CCTTTGCTGG CCCACGGGCA AGCAAAAAAA GTGCTGATCA TCGGCGGTGG CGATGGCGCA ATGCTGCGAG AAGTCAGCCG CCACAAGAAT ATTGAGCAGA TTACCATGGT GGAAATTGAC GCCGGGGTCG TAGAATTTTG CCGCCAGTAT TTGCCTAATC ATAGCGCGGG GGCGTATGAC GATCCTCGTT TCAAGCTAGT CATCGACGAT GGTGTGAATT TCGTTAATCA GACCACTGAA AAATTCGATG TCATCATTTC TGACTGTACC GATCCTATCG GTCCTGGCGA AAGCCTGTTT ACCTCTGTAT TTTATGAGGG ATGCGCCCGT AGCCTGAATG AGGGGGGGAT CTTCGTTGCA CAAAACGGCG TCTGTTTCCT ACAACAGGAT GAAGCCGTCA ATAGCCATAA CAAACTTAGC CACTATTTCA GTGACGTTAG TTTTTATCAG GCCGCAATTC CAACGTATTA CGGCGGTATT ATGACCTTTG CCTGGGCGAC ACAGAACCCG GCTCTGCGCC AGTTGGATCT CGCCACCTTG CAAAACCGCT TTGCCCAAGC TGGCTTGGCC TGCCGCTACT ATAACCCAGC GATTCATGTC GGCAGCTTTG CTTTACCACA GTATTTGCTA GATGCCTTAA CGACGATACC CAAAGTCATT GGCGTCGATT CAAGTGAATA A
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Protein sequence | MSQKELWYET LHANFGQYFS VENVLFREKT EHQDLVIFEN PELGRVMALD GVVQTTERDE FIYHEMMTHV PLLAHGQAKK VLIIGGGDGA MLREVSRHKN IEQITMVEID AGVVEFCRQY LPNHSAGAYD DPRFKLVIDD GVNFVNQTTE KFDVIISDCT DPIGPGESLF TSVFYEGCAR SLNEGGIFVA QNGVCFLQQD EAVNSHNKLS HYFSDVSFYQ AAIPTYYGGI MTFAWATQNP ALRQLDLATL QNRFAQAGLA CRYYNPAIHV GSFALPQYLL DALTTIPKVI GVDSSE
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