Gene YPK_3800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3800 
SymbolmiaA 
ID6089925 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp4186723 
End bp4187664 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content51% 
IMG OID641598890 
ProducttRNA delta(2)-isopentenylpyrophosphate transferase 
Protein accessionYP_001722520 
Protein GI170026015 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0324] tRNA delta(2)-isopentenylpyrophosphate transferase 
TIGRFAM ID[TIGR00174] tRNA isopentenyltransferase (miaA) 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.133233 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGATA TTGAGAATCT AGATCGTCCA CCGGCAATTT TTATTATGGG GCCAACTGCT 
TCCGGTAAAA CCGCGCTCTC TATTGCGTTG AGGCAGCGAT TGCCTGTGGA GTTAGTCAGC
GTCGATTCTG CTCTTATCTA CCGTGGCATG GATATCGGTA CCGCGAAACC CAGTGCACAA
GAGCTGGCGT TAGCGCCACA CCGGTTGATT GATATCCGTG ATCCCGCTGA ATCATACTCC
GCTGCCGATT TTCGTAAAGA TGCTCTGAAA GAAATGGCCG ACATCACTGC TGCGGGGCGT
ATTCCGCTGC TAGTGGGGGG GACAATGTTG TATTTTAAAG CGCTGTTGGA TGGGTTATCT
CCGTTACCCT CCGCAGATCC TCAAGTACGC CAGCGTATTG AACAGCAGGC GTCGGAGCTC
GGTTGGGGCG CATTGCACCA GCAATTGGCC GTGATCGATC CAGTCGCGGC GGCACGGATT
CACCCCAATG ATCCCCAAAG GCTCTCCAGA GCACTGGAAG TTTTTTTTAT TTCAGGTAAA
ACTTTAACGG AACTGACTAA AATTTCGGGT GAAACCTTAC CTTACCGGGT TCACCAATTT
GCGATTGCGC CTGCTAGCCG GGAACTGTTG CACCAGCGGA TTGAATTACG TTTTCATCAG
ATGCTGGATG CAGGGTTTGA AGCAGAGGCT AGGGTGCTTT TTGACCGCGG TGATTTGCAT
ACGGACTTGC CTGCCATTCG TTGTGTGGGA TACCGGCAGA TGTGGTCTTA TCTGTCTGGT
GAGATTGATT ACAACGACAT GGTATACCGC GGAGTTTGTG CGACACGTCA ACTGGCAAAG
CGCCAAATGA CCTGGTTGCG GGGCTGGAGT TCAGTTCAAT GGCTCGACAG TGATAAGCCG
GGAGAGGCTT TAGACTCCGT AATACAGGTT GTTAGTGCAT AG
 
Protein sequence
MNDIENLDRP PAIFIMGPTA SGKTALSIAL RQRLPVELVS VDSALIYRGM DIGTAKPSAQ 
ELALAPHRLI DIRDPAESYS AADFRKDALK EMADITAAGR IPLLVGGTML YFKALLDGLS
PLPSADPQVR QRIEQQASEL GWGALHQQLA VIDPVAAARI HPNDPQRLSR ALEVFFISGK
TLTELTKISG ETLPYRVHQF AIAPASRELL HQRIELRFHQ MLDAGFEAEA RVLFDRGDLH
TDLPAIRCVG YRQMWSYLSG EIDYNDMVYR GVCATRQLAK RQMTWLRGWS SVQWLDSDKP
GEALDSVIQV VSA