| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3790 |
|---|
| Symbol | |
|---|
| ID | 6089516 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 4176181 |
|---|
| End bp | 4176921 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641598880 |
|---|
| Product | 23S rRNA (guanosine-2'-O-)-methyltransferase |
|---|
| Protein accession | YP_001722510 |
|---|
| Protein GI | 170026005 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0566] rRNA methylases |
|---|
| TIGRFAM ID | [TIGR00186] rRNA methylase, putative, group 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA TTATTTACGG TATTCATGCC GTTAAAGCCC TATTAGAACG TGATCCGCAG
CGTTTCCTGG AAGTCTTTAT TCTGAAAGGC CGCGACGATC GACGTTTGCA ACCGCTAATC
GCAGAGCTGG AAGCCGCCGG TTTAGTGATT CAGGTGGCTA GCCGCCAGTG GCTGGATTCA
CAGGTTGAGG GGGGCGTCCA TCAGGGGATC GTGGCGCGGG TACGTGAAGG GCGTCAGTAT
CAGGAAAATG ACTTACCTGC ACTACTGGAA AGTGTCGAAA CACCTTTCCT GCTCGTGTTG
GATGGCGTCA CCGATCCACA CAATCTGGGG GCATGTTTGC GTAGCGCAGA TGCCGCGGGG
GTCCATGCGG TTATCGTGCC ACGGGATCGC TCAGCACAGC TAAATGCGAT TGCCAAGAAA
GTGGCAAGTG GTGCGGCTGA AAACGTGCCA TTGATCAAAG TCACCAATTT GGCACGTACC
CTGCGAGTAT TGCAGGAACA TAACGTCTGG ATTGTGGGAA CGGCGGGTGA AGCCGATCAC
ACCCTGTATC AAAGCAAAAT GACCGGTCCG ATGGCATTGG TGATGGGGGC AGAAGGTGAA
GGTATGCGCC GCTTAACCCG CGAACACTGC GACGAACTGA TCAGTATTCC AATGGCCGGG
AGTGTTTCCT CCCTCAACGT TTCTGTCGCG ACAGGTGTCT GTTTATTTGA AGTCGTGCGC
CAGCGTGGAT TGAAAGCCTG A
|
|---|
| Protein sequence | MSEIIYGIHA VKALLERDPQ RFLEVFILKG RDDRRLQPLI AELEAAGLVI QVASRQWLDS
QVEGGVHQGI VARVREGRQY QENDLPALLE SVETPFLLVL DGVTDPHNLG ACLRSADAAG
VHAVIVPRDR SAQLNAIAKK VASGAAENVP LIKVTNLART LRVLQEHNVW IVGTAGEADH
TLYQSKMTGP MALVMGAEGE GMRRLTREHC DELISIPMAG SVSSLNVSVA TGVCLFEVVR
QRGLKA
|
|---|
| |