Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3724 |
Symbol | |
ID | 6089596 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 4113067 |
End bp | 4115061 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641598812 |
Product | ATP-dependent RNA helicase DeaD |
Protein accession | YP_001722444 |
Protein GI | 170025939 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTACTG AGCTTGAAAC CTCTTTTGCT GATCTGGGGC TGTCCGCTCC AATTCTTTCC GCTCTGACTG ATCTTGGTTA TGAAAAACCA TCTCCTATCC AGTTGGAATG TATTCCACAC CTGTTAAACG GCCGTGATGT TCTCGGTATG GCGCAAACAG GCAGTGGCAA AACAGCCGCG TTTGGTCTGC CGCTGTTACA CAATATTAAA GCTGATCTGA AGTCGCCACA GGTTCTGGTG TTGGCACCAA CCCGTGAATT GGCTGTTCAG GTTGCTGAAG CGCTGTCCAG TTTCTCTAAA CACATTAATG GCGTCAAGGT GGTGGCCCTG TACGGCGGTC AGCGTTATGA CGTTCAATTA CGCGCTTTGC GCCAGGGGCC ACAAGTTGTT GTTGGTACCC CAGGTCGTCT GTTAGACCAC CTGAAACGCG GTACCCTTAA CCTGTCCAAC CTGAGCGGTT TAGTGTTGGA TGAAGCAGAT GAAATGCTGC GCATGGGCTT TATCGAAGAC GTTGAAACGA TTATGGCGCA GATCCCGGCT GAACATCAGA CCGCGTTGTT CTCTGCAACC ATGCCAGAAG CGATTCGTCG TATTACGCGT CGCTTCATGA AAGAACCACA GGAAGTCCGC ATTCAATCTA GCGTGACGAC CCGCCCTGAC ATTAGCCAGA GCTACTGGAG AGTGGGTGGC GGTTACCGTA AAAATGAAGC GCTGGTACGT TTCCTGGAAG CTGAAGATTT CGATGCTGCT ATTATTTTCG TACGTACCAA AAATGCGACC TTGGAAGTAG CAGAAGCCCT TGAGCGTAGC GGCTACAACA GCGCGGCACT GAATGGTGAT ATGAATCAGG CACTGCGTGA GCAGACGCTG GAGCGTTTGA AAGATGGCCG TCTGGATATT CTGATTGCAA CTGACGTAGC TGCCCGTGGC TTGGACGTTG AGCGTATCAG CTTGGTCGTA AACTATGATA TCCCTATGGA TTCAGAGTCT TATGTTCACC GTATCGGTCG TACTGGCCGT GCAGGTCGTG CAGGTCGCGC GTTGCTGTTC GTTGAGAACC GTGAACGTCG TCTGTTGCAG AACATCGAAC GCACGATGAA GCTGACGATC CCAGAAGTTG AGTTGCCAAA CGCAGATTTG CTGAGCGAAC GTCGTTTAGC TAAATTCGCC GCTAAGGTTA GCCAACAACT GGAAAGCAGT GATTTGGATA TGTACCGCGC ATTGCTGGCT AAGCTGCAAC CGGAAGAAGA GTTTGATATC GAGACTCTGG CTGCTGCACT GCTGAAAATG GCGCAGGGCG AACGTCCTCT GATCCTGCCA CCAGAAGCCC CACGCCGTCC GCAGCGTGAA TTCAATTCAC GTGATGACCG TGGTAACGAT CGTGGTAGCC GTGATCGTGG TGACAGCCGT CGCGATAACC GCTCTGACAG CCGTTCTGCT GATAGCCGTG ATGGTGGTGA GCGTCCTGCT CGTCGTGAAC GTCGTGATGT TGGCGAGATG GAGCTGTACC GCATTGAAGT GGGCCGTGAT GATGGTGTTG AAGTTCGCCA TATTGTTGGC GCTATCGCTA ACGAAGGTGA TATCAGCAGC CGTTATATCG GTAATATCAA GTTGTTTGCT TCCCACTCAA CGATTGAACT GCCAAAAGGC ATGCCGGGCG AAATGTTATC TCACTTCACC CGTACCCGTA TCCTGAACAA GCCGCTGAAC ATGCAGCTGT TGGGTGATGC ACAGCCGCAT GAACGCCGTG AGCGTCCAGC GGGTGGTAAC GGTGGTGAGC GTCGTGGCGG TGGCCGTCCA TTCAGTGGCG AACGTCGTGA AGGCGCAGGC GCTCCTCCTC GTCGTTCATT TAGCGGCGAT CGTGCTCCTA CCGGTGGTGG TGAGCGTCGT GGTAACCGCG ATGGTCAGCG TTCTGCGGCC CCACGTCGTG ATGATGCTGC CGCACCTGCT GCTGCAGCCG CCGCACCAGC CCGTCGTCGC TTCGGTGATG CATAA
|
Protein sequence | MTTELETSFA DLGLSAPILS ALTDLGYEKP SPIQLECIPH LLNGRDVLGM AQTGSGKTAA FGLPLLHNIK ADLKSPQVLV LAPTRELAVQ VAEALSSFSK HINGVKVVAL YGGQRYDVQL RALRQGPQVV VGTPGRLLDH LKRGTLNLSN LSGLVLDEAD EMLRMGFIED VETIMAQIPA EHQTALFSAT MPEAIRRITR RFMKEPQEVR IQSSVTTRPD ISQSYWRVGG GYRKNEALVR FLEAEDFDAA IIFVRTKNAT LEVAEALERS GYNSAALNGD MNQALREQTL ERLKDGRLDI LIATDVAARG LDVERISLVV NYDIPMDSES YVHRIGRTGR AGRAGRALLF VENRERRLLQ NIERTMKLTI PEVELPNADL LSERRLAKFA AKVSQQLESS DLDMYRALLA KLQPEEEFDI ETLAAALLKM AQGERPLILP PEAPRRPQRE FNSRDDRGND RGSRDRGDSR RDNRSDSRSA DSRDGGERPA RRERRDVGEM ELYRIEVGRD DGVEVRHIVG AIANEGDISS RYIGNIKLFA SHSTIELPKG MPGEMLSHFT RTRILNKPLN MQLLGDAQPH ERRERPAGGN GGERRGGGRP FSGERREGAG APPRRSFSGD RAPTGGGERR GNRDGQRSAA PRRDDAAAPA AAAAAPARRR FGDA
|
| |