| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3718 |
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| Symbol | |
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| ID | 6090995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 4106021 |
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| End bp | 4109146 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641598806 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001722438 |
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| Protein GI | 170025933 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGCCC GTTTCTTTAT TTATCGCCCG GTTTTTGCCT GGGTCATTGC CATTGTTATT
ATGTTGGGCG GGGTGGTTGC GCTGGAAACC TTGCCGATAG CCCAGTATCC CGATGTCGCA
CCACCATCTA TTTCCATTAA AGCCACCTAT ACCGGTGCTT CAGCAGAAAC ACTCGAAAAC
AGTGTGACGC AGGTCATTGA GCAAGAACTG ACCGGATTGG ATGGTCTGCT CTATTTTTCC
TCCTCCAGCG GTTCCGATGG TAATGCCAAG ATCGTCGCCA CATTTAAGCA GGGGACTAAT
GCTGATACCG CGCAGGTACA GGTGCAAAAT AAGGTTCAGC AGGCGCTAAC CCGTTTGCCA
ACAGAGGTGC AGGCGCAAGG GGTCACGGTG ACCAAGTCGC AGACTAACTT CTTGTTGATC
ATGTCGCTGT ATGATGAAAA AGACAAACAC ACCGGAACGG ATATTGCCGA CTATCTGGTC
AGCAACCTGC AAGACCCACT GGCTCGCCTC GAAGGGGTAG GGAGTGTGCA GGTGTTTGGT
TCGCAATATG CGATGCGGAT TTGGTTAAAT CCGACCAAAC TGGCCGCTTA CAATCTGATG
CCCAGCGATG TTCAATCCGC CATTACGGCA CAGAACACAC AGGTTTCTGC TGGCAAAATC
GGGGCGTTAC CGAGCGGTAA AGAGCAGCAA TTGACCGCGA CAGTCATGGC GCAATCCCGC
CTGAAAACAC CGGAGCAGTT CAACAATATT ATTGTTAAAA GTGACAGCAC GGGCGCGGTG
GTACGACTGC GCGATGTGGC CCGTGTTGAG CTGGGCAATG AAGATTACAG CGTGACGACC
CGCTTGAACG GCCATCCAGC CGCGGGGATC GCGGTGATGC TGGCACCTGG TGCTAATGCG
CTGGCGACCG CCGAGCGGGT AAAGGCCAAG GCTGCCGAGT TTGAATTGAA CTTGCCTGAC
GGATACAAAA TCGCGTATCC AAAAGACAGC ACTGATTTTA TTAAAGTTTC GGTCGAGGAA
GTGGTGAAAA CGCTGATCGA AGCCATCTTG CTGGTGGTTA TCGTGATGTA CATCTTCCTA
CAAAATATCC GTGCCACTTT GATACCGGCT ATTGCCGTCC CAGTTGTGTT GTTAGGGACG
TTTGGGGTGT TGGCCATATT CGGCTACTCA ATCAATACAC TGACACTTTT TGGTATGGTG
CTGTCGATCG GCTTGTTGGT CGACGATGCT ATTGTCGTGG TGGAAAACGT TGAGCGGGTG
ATGCGGGAAG ACAATCTCCC GCCCCGTGAA GCGACTGAGA AATCTATGAG TGAGATCGCC
AGCGCACTGA TTGGGATTGC ACTGGTGCTC TCGGCAGTAT TCCTGCCCAT GGCCTTCTTT
GGTGGGGCGA CCGGCGTTAT CTACCGCCAG TTCTCCATCA CCATTGTGTC AGCGATGGCG
CTATCCGTGT TGGTCGCATT AACCCTCACG CCAGCATTGT GCGCCACCTT CCTGAAACCC
AACCATAAAC CGCCATCAGA GCACGGTTTC TTCGGCGGGT TCAACCGTCG CTATGACCGG
ATGCAGACCC GTTATGAAAG CCTGGTAGGG CATGTTATTC ACCGCTCTTT GCGCTATTTA
CTGATTTACG CCGTGCTGAT TGGGGTGATG TGTGTGTTGT TTATTCGCCT GCCAACGGGC
TTTTTACCGA CCGAAGATCA GGGTGATGTC ATGGTGCAAT ATACCTTGCC AGCAGGGGCA
ACCAGTGGGC GCACCATGGA GGTCAGTAAG GCGGTAGAAA ACTATTTCAT GACGCAGGAA
AAGGACAATA CCAAAGCGGT CTTCACTATC TCCGGTTTTG GCTTTAGTGG TAGTGGGCAA
AATGCCGGTA TGGCGTTTAT TGCATTGAAA CACTGGCGTG ATCGACCGGG CAGTGAAAAT
ACCGCCACAG CCATTGCAGA TCGCGCGATG AAGGCACTGT CGAGTATTCG CGATGCCCAA
ATTTTCAGTA TGACGCCACC TGCGGTGGAT GGGTTAGGCC AGTCGAATGG CTTTACTTTT
GAGTTGCAAG CCACAGGGGA TACCAGCCGC GAGCAACTGC TGACCTTGCG CGATCAACTG
ATTAGCAAGG CGAATAAAGA CCCTATTTTG GCCTCAGTTC GCGCCAATAC CTTGCAACAA
ATGCCGCAGT TACAAGTAGA TATCGATAAC GATAAAGCGG CGGCATTAGG GCTGTCGATC
AGTGATGTGA ATGCCACATT AAGTGCCGCC TGGGGTGGGA CGTATATCAA TGACTTTATT
GATCGTGGGA GAGTGAAAAA AGTGTATATG CAGGGTGATG TGGATACCCG CTCTAAACCG
GAGGATCTCA ACCAATGGTT CGTGCGCGGT AGCAGTGATG CCATGACATC GTTTTCTGCC
TTTGCGACAA CTCGCTGGAT TTACGGCCCG GAAACGCTTT CCCGCTATAA CGGGCAGACG
TCCTATGAAA TTCAGGGGCA GGCCGCTTCC GGCAGCAGTT CGGGCACCGC AATGGATCAA
ATGGAGAAAC TGGCGGCTGA ATTACCTGGC ACCAGTTATG CGTGGAGCGG GCTGTCTTAT
CAGGAGCGTT TAGCCAGCGG GCAAGCATTA TCGCTGTATG CCATTTCAAT CTTGGTGGTA
TTCCTGTGTT TGGCGGCGTT GTATGAGAGT TGGTCAGTCC CGTTCTCGGT CATGATGGTT
ATTCCGTTGG GGATAATCGG TGCAGTAGCG GCAGCGACGC TGCGGGGATT GGAGAATGAT
ATTTACTTCC AGGTGGCGTT GTTGACGACC CTGGGTCTGG CATCGAAAAA CGCCATTCTG
ATTGTTGAAT TTGCCGAAGC GGCCTATTTA CGCGGCGAAC CGCTGGTGGT GGCGGCGTTG
CAGGGCGCTG CAACTCGCTT ACGGCCTATC CTGATGACAT CGCTGGCATT TATTGCTGGG
GTAATGCCTC TGGCAATGTC TACCGGTGCC GGTGCTAACA GCCGCATTTC AATCGGCAGC
GGCATTATTG GCGGCACCTT AACGGCGACA GTGTTGGCCG TCTTTTTTGT CCCGCTCTTT
TTTGTCTTGA TTCGTCGAGT GTTCAGCGGC AAGTCAAAAA ATATCACTGA ACATAAAGGA
GTATAA
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| Protein sequence | MFARFFIYRP VFAWVIAIVI MLGGVVALET LPIAQYPDVA PPSISIKATY TGASAETLEN
SVTQVIEQEL TGLDGLLYFS SSSGSDGNAK IVATFKQGTN ADTAQVQVQN KVQQALTRLP
TEVQAQGVTV TKSQTNFLLI MSLYDEKDKH TGTDIADYLV SNLQDPLARL EGVGSVQVFG
SQYAMRIWLN PTKLAAYNLM PSDVQSAITA QNTQVSAGKI GALPSGKEQQ LTATVMAQSR
LKTPEQFNNI IVKSDSTGAV VRLRDVARVE LGNEDYSVTT RLNGHPAAGI AVMLAPGANA
LATAERVKAK AAEFELNLPD GYKIAYPKDS TDFIKVSVEE VVKTLIEAIL LVVIVMYIFL
QNIRATLIPA IAVPVVLLGT FGVLAIFGYS INTLTLFGMV LSIGLLVDDA IVVVENVERV
MREDNLPPRE ATEKSMSEIA SALIGIALVL SAVFLPMAFF GGATGVIYRQ FSITIVSAMA
LSVLVALTLT PALCATFLKP NHKPPSEHGF FGGFNRRYDR MQTRYESLVG HVIHRSLRYL
LIYAVLIGVM CVLFIRLPTG FLPTEDQGDV MVQYTLPAGA TSGRTMEVSK AVENYFMTQE
KDNTKAVFTI SGFGFSGSGQ NAGMAFIALK HWRDRPGSEN TATAIADRAM KALSSIRDAQ
IFSMTPPAVD GLGQSNGFTF ELQATGDTSR EQLLTLRDQL ISKANKDPIL ASVRANTLQQ
MPQLQVDIDN DKAAALGLSI SDVNATLSAA WGGTYINDFI DRGRVKKVYM QGDVDTRSKP
EDLNQWFVRG SSDAMTSFSA FATTRWIYGP ETLSRYNGQT SYEIQGQAAS GSSSGTAMDQ
MEKLAAELPG TSYAWSGLSY QERLASGQAL SLYAISILVV FLCLAALYES WSVPFSVMMV
IPLGIIGAVA AATLRGLEND IYFQVALLTT LGLASKNAIL IVEFAEAAYL RGEPLVVAAL
QGAATRLRPI LMTSLAFIAG VMPLAMSTGA GANSRISIGS GIIGGTLTAT VLAVFFVPLF
FVLIRRVFSG KSKNITEHKG V
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