Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3565 |
Symbol | |
ID | 6087063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3927740 |
End bp | 3928300 |
Gene Length | 561 bp |
Protein Length | 186 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641598649 |
Product | type VI secretion protein |
Protein accession | YP_001722285 |
Protein GI | 170025780 |
COG category | [S] Function unknown |
COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAAAG ATGCGAGCTC GCAAAAATTT ATCGGTAGAA ATAATGCACC TAGAGTGCAA ATTGAATATG ACGTCGAAAT TTATGGTTCA AATAAGAAAG TAGAGTTGCC TTTTGTAACC GGCGTGATGG CTGATCTTTC TGGCCACAGG GCAAAGCCTC TTCCCGCCGT TGAAGATCGT AAATTCCTTA CTTTCGATCA GGATAATTTC GATGCCCGGA TGAGAGCAAT TAAGCCTCGC CTTAAATTCT ACGTAGATAA CACCTTGAGT GAGGATAACG AACTCCTGGA TATCGAACTG GATTTTGAGT CAATGGATGA CTTTTCTCCC GGATCGTTAG CGCGGCGTAT TCCTCAAATG GAAAAACTGC TTGAGGCACG TACCCATCTG GCTGAATTGA TCACCTATAT GGATGGTAAA ACCAGCGCAG AAGAGGTGGT TAAACAACTG CTTGAACAAC CTGATTTTTT ACAAAATCTT GCGACCGATG CACAGGGAAC TATTTCGAAG CTCAGCCAGG ATGATGATGT TTTAGTGGAA GATGACGATG GAGAAAAATA G
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Protein sequence | MAKDASSQKF IGRNNAPRVQ IEYDVEIYGS NKKVELPFVT GVMADLSGHR AKPLPAVEDR KFLTFDQDNF DARMRAIKPR LKFYVDNTLS EDNELLDIEL DFESMDDFSP GSLARRIPQM EKLLEARTHL AELITYMDGK TSAEEVVKQL LEQPDFLQNL ATDAQGTISK LSQDDDVLVE DDDGEK
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