Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3560 |
Symbol | |
ID | 6089579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3922178 |
End bp | 3923161 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641598644 |
Product | type VI secretion protein |
Protein accession | YP_001722280 |
Protein GI | 170025775 |
COG category | [S] Function unknown |
COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAGCC TCCAGATGCT GAAAAACACG TTTCTGCCGG GTATCTCGGC CAGTCAGGAC TTTTTCGAGT TGCTGCGTCG GATTGAGCGT GCCACTCCAG AGCAAGGCCG GCTTGGCACC CAACGTGATC GTAGCCACCT GAGGCTACGT ATTATTCAGC CTGCCGATAT GGGATTTGCA CCGCGTGAAG TGAGTGATAT CAGGCAAACG CTGAACACTC ATCAGCATCT GGCAGAGATC ACCATTTTCT GCCGCCATTT TGGTTTATTT GCCCCGTATG GCCCGTTGCC AATACATGTT ACCGAACATG CTCGTAACGA AGCGTTGGCT AAACGTAATC AGGCCTTTGA ACATTTTGCG GGCATTCTCA GCCAGCGAAT GGCGATCTTG CATTATCGCT CTTGGGCCCA AATGCACGTC GCCGTGGGGC ATGATCGCGC GTCAGCCAAT CCCTTTATGA ACCATGTGCG TCAAATCGTG GGCCTAACGC CGCAGCAAGC GCTGAATTCA CATGTGGATC GGGTACGGCG TTGCTTTCCG GGGGTGTATC TGCCGGGCAG AGGATCATTA CGCAAATTAC AGGAGATCCT GAGCCTGTAT TTCTCGGTTC CTATCCGTGT TGAAGCCCGT AAAGGATTGT GGATTGACGA CTCGCGCAAT ATAGAAAGCC AACGTATGGG ACGGTTGGGT AACACGCGTA TTGGCAGCCG TTTCTTCGAT GTGCAGCACA GCCTGGTGTT ATCTATTGGT CCGGTATCTG ACCCCCAATA TCTGGATTTT CAACGCAACA GCAAACGCAT TAACACTCTG GTGCAAATCT GCCATGACTT TGTCCGCCAT CGGATGGTGC TGGACGTGCA ATTAATCATA CAGACCTCAC CCAATATGGC TTGTCGTCTT GGCGGTGGAA CGCTCAGCCG CCATAGCTGG TTAAAGCCAG GCTCAGCCTT GAGTATACAG CCAATTTATA GAACGGTTAC CTAG
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Protein sequence | MASLQMLKNT FLPGISASQD FFELLRRIER ATPEQGRLGT QRDRSHLRLR IIQPADMGFA PREVSDIRQT LNTHQHLAEI TIFCRHFGLF APYGPLPIHV TEHARNEALA KRNQAFEHFA GILSQRMAIL HYRSWAQMHV AVGHDRASAN PFMNHVRQIV GLTPQQALNS HVDRVRRCFP GVYLPGRGSL RKLQEILSLY FSVPIRVEAR KGLWIDDSRN IESQRMGRLG NTRIGSRFFD VQHSLVLSIG PVSDPQYLDF QRNSKRINTL VQICHDFVRH RMVLDVQLII QTSPNMACRL GGGTLSRHSW LKPGSALSIQ PIYRTVT
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