Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3430 |
Symbol | ispF |
ID | 6088957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3763819 |
End bp | 3764307 |
Gene Length | 489 bp |
Protein Length | 162 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641598514 |
Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
Protein accession | YP_001722150 |
Protein GI | 170025645 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.554519 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGATCG GTCATGGTTT CGATGTTCAT AAATTTGGCG AGAATGGCAG TGGTCCACTC ATTATTGGTG GCGTGCGTAT CCCATATGAA AAGGGGTTAC TGGCCCATTC TGACGGCGAT GTTGCATTAC ATGCGGCCAC TGATGCGCTA TTAGGCGCTG CTGCATTAGG TGATATCGGG AAACTCTTCC CCGACACTGA CCCGGCATTT AAAGGCGCAG ATAGCCGAGG TTTACTGCGA GAAGCGTATC GCCGTATTCT GGCCAAAGGC TATAAATTGG GGAATCTGGA TATTACCATT ATTGCCCAGG CACCTAAAAT GGCACCGCAT ATTCCACAAA TGCGCGTTAA TTTAGCAGAA GACCTACAAT GTCATATGGA TGACATCAAC GTCAAAGCGA CCACCACGGA ACAGCTTGGT TTTACCGGGC GTGGTGAAGG TATTGCGTGT GAAGCGGTGG TTTTATTAGT TAACGTAGAA CAGGGTTAA
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Protein sequence | MRIGHGFDVH KFGENGSGPL IIGGVRIPYE KGLLAHSDGD VALHAATDAL LGAAALGDIG KLFPDTDPAF KGADSRGLLR EAYRRILAKG YKLGNLDITI IAQAPKMAPH IPQMRVNLAE DLQCHMDDIN VKATTTEQLG FTGRGEGIAC EAVVLLVNVE QG
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