| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2807 |
|---|
| Symbol | |
|---|
| ID | 6088095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 3095683 |
|---|
| End bp | 3096423 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 641597876 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_001721536 |
|---|
| Protein GI | 170025031 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACTT ATAAAGAAAT ATCGACGCTG AACGAATTGG AATTGATAGT TTATAATTAC
ATCATAAAAA ATACTGACAA AGTGATGTAC ATGACGATCA GGGAGCTCGC AGATGCCTCG
GGTGTTTCTA CCACCACGGT TTTACGATTT TGTAAAAAAA TGAACTGTGA TGGTTATTCT
GAATTCCGTA TCCGGTTTAA ATTATATTTA GAACATGATG AGAAACCACC AGTTACCTTT
GGCATCAGTG AAATAATCAG TTATTTTAAG AGCATTAATA ATAGCGAGTT TGATGAGCTA
TTAGATAACG TAGCGAAACA GATAGCGGCA ACGCGCAGAG TTATTTTTGT TGGTATAGGC
ACCTCGGGAG CATTGGGGAA ATACAGCGCC CGCTTCTTTT CTAATGTTGG TAAATACAGC
ACCTACATTG ATGACCCCTA TTATCCTATT AACAGCGACA TGTATCAGGA CGCGGTCGCC
ATTATCCTTT CAGTCTCTGG AGAAACAGAA GAAATTATTC GCATTGCCAA CCAATTTAGC
CTGCAAAATT GTAAAATTAT CAGCCTGACC AACAGTGAAA GTTCCACCTT GGCTAAAATG
GCTGATCTCA ATATCTCCTA TCACATGCCC CCGGTTATCC TTGAAGGCCA GTATAATATT
ACTACCCAAA TTCCGGTGCT ATATATTATT GAAACTATTG GCAAGAAATT ACCTCAGCTA
ATGAATAAAA ACACTAAATA A
|
|---|
| Protein sequence | MFTYKEISTL NELELIVYNY IIKNTDKVMY MTIRELADAS GVSTTTVLRF CKKMNCDGYS
EFRIRFKLYL EHDEKPPVTF GISEIISYFK SINNSEFDEL LDNVAKQIAA TRRVIFVGIG
TSGALGKYSA RFFSNVGKYS TYIDDPYYPI NSDMYQDAVA IILSVSGETE EIIRIANQFS
LQNCKIISLT NSESSTLAKM ADLNISYHMP PVILEGQYNI TTQIPVLYII ETIGKKLPQL
MNKNTK
|
|---|
| |