| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2487 |
|---|
| Symbol | |
|---|
| ID | 6087744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 2718099 |
|---|
| End bp | 2719817 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641597553 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001721217 |
|---|
| Protein GI | 170024712 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.461616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCGCC GTTTTTTCTC TTATTACGCC CCGTATAAAG GGCTTTTCTT CCTAGATTTT
GGTTGCGCAA TTCTAGCCGG GCTCTTAGAA CTCAGCTTCC CAATGGCGGT AAAGCTGTTT
ATCGATAAAC TGCTTCCCAA TCAGGACTGG GTGATGATCG TATGGGCAGC GGCTGGGCTA
CTACTGATTT ATCTACTGAA TACAGTACTG ATGGCCATTG TCAATTATTG GGGTCATGCG
CTCGGTGTCG GTATCGAAAC AGACATGCGC CGTCAAGCAT TCAATCACTT ACAAAAACTG
TCATTTAGCT ATTATGACAA TATAAAAACA GGTCATATCA TCACGCATGT CACCAAAGAT
CTGGAAGAAG TCGGCGAGGT TGCCCACCAC GGTCCAGAAG ACCTTTTCAT TGCCGTCATG
ACCTTTATTG GTGCCTTTAT CTTGATGGCC ACCGTTCATT TACCACTGGC GATGGTCACT
ATCATCATTG TGCCGTTTAT GACCTATCTG GTTACCCGCT ATGGTTCAAA AATGACGGAT
ACCTGGCGCA AACTGTTTGG CCAGGTGGGT AATTTTAATA CCCGTATCGA AGAGAGCATT
GGTGGTATTC GCGTGGTAAA AGCCTTTGCG AATGAACCCC ACGAAGAGAA ACTCTTTGCC
AAAGATAACG AAAACTACCG GACGACCAAG CTACGAGCCT ATCGGATAAT GACCACCAGC
ATGACCATGA GCTATCTCAG CACCCGTTTG GTGCAATTGA TCGTGATGGT CGTTGGCACC
TGGTATGTAA TTCACGACCA ACTGAGCTAC GGCGGCTTTG TCGGTTTTCT GCTCTTAGTC
GAAGTATTCT TCCGCCCTGT AGAGAAAATA ACTTCAGTAC TGGAAAGTTA CCCTAAAGGA
ATTGCTGGCT TTAAGCGATT CACCCAGTTG ATTGATACAT TACCTGATAT TGTCGATCAA
CCGAATGCGC GTCCGGTTGG TCACCTCCGT GGGGATATCA GCTACCAACA TGTTTGCTTT
GGTTATTCGT CCCAAGCGCC CATTTTCACT GATTTAAATC TGCAAATTCA TGCGGGTGAA
ACCGTCGCGT TCGTCGGGCC ATCTGGGGCG GGTAAAACCA CGTTGTGCTC ATTGCTCCCT
CGATTCTATG AGCTGAATGC AGGTGCTATC ACTATTGATG GGATTGATAT CCGAGAGATG
ACACAGCAGT CTTTACGCAA CAATATTGGT ATTGTTCAGC AGGATGTCTT CTTATTCGGC
GGATCTATCC GAGAGAATAT TGCCTACGGT AAGCTGAATG CCAGCGATGA CGAAATTATG
GTTGCCGCAC AACGGGCACG TTTGGATGAA TTAATCAGTT CTCTGCCCGA AGGGCTAGAT
ACTCTCGTCG GTGAACGTGG GGTGAAATTA TCTGGCGGAC AAAAACAGCG TCTATCCATT
GCGCGTATTT TTCTGAAGAA CCCCCCGATT CTGATTTTGG ATGAGGCTAC ATCAGCGCTG
GATACCGCTA CCGAGCAAGC GATTCAATTG GCGCTAACAG AATTATCTCA AGGCAGAACC
ACACTGGTCA TTGCACACCG CTTAGCCACA ATTCAAAATG CTGATCGTAT TATTGTGGTC
GATAAAGGAG GGATTATTGA ACAAGGGGAT CATCACGAGT TACTGGCACG TCAAGGTGCC
TACGCAATAT TACACCATGC TCAGTTTAGT GCGGCCTGA
|
|---|
| Protein sequence | MLRRFFSYYA PYKGLFFLDF GCAILAGLLE LSFPMAVKLF IDKLLPNQDW VMIVWAAAGL
LLIYLLNTVL MAIVNYWGHA LGVGIETDMR RQAFNHLQKL SFSYYDNIKT GHIITHVTKD
LEEVGEVAHH GPEDLFIAVM TFIGAFILMA TVHLPLAMVT IIIVPFMTYL VTRYGSKMTD
TWRKLFGQVG NFNTRIEESI GGIRVVKAFA NEPHEEKLFA KDNENYRTTK LRAYRIMTTS
MTMSYLSTRL VQLIVMVVGT WYVIHDQLSY GGFVGFLLLV EVFFRPVEKI TSVLESYPKG
IAGFKRFTQL IDTLPDIVDQ PNARPVGHLR GDISYQHVCF GYSSQAPIFT DLNLQIHAGE
TVAFVGPSGA GKTTLCSLLP RFYELNAGAI TIDGIDIREM TQQSLRNNIG IVQQDVFLFG
GSIRENIAYG KLNASDDEIM VAAQRARLDE LISSLPEGLD TLVGERGVKL SGGQKQRLSI
ARIFLKNPPI LILDEATSAL DTATEQAIQL ALTELSQGRT TLVIAHRLAT IQNADRIIVV
DKGGIIEQGD HHELLARQGA YAILHHAQFS AA
|
|---|
| |