Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_2240 |
Symbol | hmsF |
ID | 6087745 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 2484259 |
End bp | 2486280 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641597305 |
Product | outer membrane N-deacetylase |
Protein accession | YP_001720974 |
Protein GI | 170024469 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGAAGC TATTAATTTT TATCAAATCG CTCATTGTTG GGATGATGAT CGTGTCCACT ATGGGGTGTG CGGAGAAGCC AACGTTCGTT CCGCCTGCAC AACGTGCATT GCCGCAAAGT GAAAGACCGT GGCAAAAGAA TACATTTGTT GTGATTGCTT ATCATGACGT TGAAGACGAT TCAGCCGATC AACGCTATCT GTCGGTAAGA AGCAGCGCAT TAAATGAGCA GTTCGTGTGG TTGCGTGATA ACGGTTACCA CGTGGTTTCT GTTGATCAAA TTTTGGCAGC CCGTAATGGT GGCCCTACAT TGCCGGATAA GGCGGTGCTC CTCACCTTTG ACGATGGTTA CAGCAGTTTT TATCGGCGCG TTTATCCCTT ACTGAAAGCA TACAAATGGA GTGCCGTATT AGCGCCAGTG GGCACTTGGA TTGATACCGC CACCGATAAA AAAGTGGATT TCGGTGGCTT GAGCACTGAT CGGGATCGTT TTGCCACCTG GAAGCAGATT ACTGAAATGT CTAAATCAGG GTTGGTTGAA ATCGGGGCGC ATACTTACGC TTCTCACTAT GGTGTGATTG CTAACCCACA GGGGAATACC GAACCGGCGG CGGCCAATCT GCAATATGAT CCCAAAACAA AACAGTATGA AACTGTTGAA GCCTTTAAGC AGCGAATGGA GAAAGACGTT GCGTTGATAA CTCAGCGTAT TGTCCAGGCA ACAGGGAAAC AACCACGGGT TTGGGTTTGG CCATACGGTG CGCCGAATGG TACGGTGCTA AATATTTTAC GCCAGCATGG TTATCAACTC GCCATGACCC TAGATCCTGG TGTGGCTAAT ATTAATGACT TGATGAATAT ACCGCGCATT TTAATCAGTA ATAATCCGTC ACTGAAGGAC TTTGCCCTCA CGGTTACCAG CGTGCAAGAA AAAAATATCA TGCGGGTGGC GCATGTTGAT TTGGATTATC TCTACGATCC AGACCCGGCT CAGGAAAAAG AGAATCTTGA TAAGTTGGTT CAGCGAATTT CTGACCTACG TGTCACTCAC GTTTTCCTGC AAGCATTTTC TGATCCGAAG GGGGATGGCA ACATTCGCCA GGTTTACTTC CCGAACCGTT GGATCCCGAT GCGTCAGGAT TTGTTTAACC GGGTGGTATG GCAATTGGCT TCACGGCCTG ATGTTGAAGT CTATGCCTGG ATGCCGGTAT TGGCGTTTGA TATGGACCCG TCTTTACCTC GTATCACGCG TATTGACCCT AAAACCGGTA AAACGAGTAT CGACCCAGAT CAATATCGCC GTTTGTCACC TTTTAACCCT GAAGTAAGAC AGCGCATTAT TGATATCTAT CGTGATATGG CCTATAGCGC GCCGATTGAC GGAATTATCT ATCACGATGA TGCGGTGATG TCTGATTTTG AAGATGCTTC CCCCGATGCT ATCCGGGCCT ATGAAAAAGC GGGCTTCCCT GGTTCGATTA CCACGATACG CCAAGATCCA GAGATGATGC AGCGGTGGAC TCGTTACAAG AGTAAGTATC TGATTGATTT TACTAATGAG TTGACCCGCG AAGTCCGTGA TATCCGTGGC CCACAGGTAA AATCGGCGCG TAATATTTTC GCTATGCCTA TTTTAGAACC AGAAAGCGAA GCATGGTTTG CACAGAATCT TGATGATTTC CTCGCTAACT ATGATTGGGT CGCACCAATG GCCATGCCGT TAATGGAGAA AGTGCCGCTA TCTGAATCTA ATGAATGGTT AGCGGAGCTA GTCAATAAAG TTGCGCAACG CCCCGGTGCT TTGGAGAAAA CCGTGTTTGA ACTGCAATCT AAGGACTGGA CCCAACCTGA GGGCAATAAC GCCATCAGCG GCCCAATACT GGCGGGATGG ATGCGCCAGT TGCAGTTAAG TGGTGCGCAA AGTTTTGGTT ACTACCCGGA TAACTTTATT ACTGGCGAAC CACCGCTAAA AGATGTCCGC CCTGTGCTGT CTTCTGCCTG GTACCCTTTA TATGATCGAT AG
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Protein sequence | MAKLLIFIKS LIVGMMIVST MGCAEKPTFV PPAQRALPQS ERPWQKNTFV VIAYHDVEDD SADQRYLSVR SSALNEQFVW LRDNGYHVVS VDQILAARNG GPTLPDKAVL LTFDDGYSSF YRRVYPLLKA YKWSAVLAPV GTWIDTATDK KVDFGGLSTD RDRFATWKQI TEMSKSGLVE IGAHTYASHY GVIANPQGNT EPAAANLQYD PKTKQYETVE AFKQRMEKDV ALITQRIVQA TGKQPRVWVW PYGAPNGTVL NILRQHGYQL AMTLDPGVAN INDLMNIPRI LISNNPSLKD FALTVTSVQE KNIMRVAHVD LDYLYDPDPA QEKENLDKLV QRISDLRVTH VFLQAFSDPK GDGNIRQVYF PNRWIPMRQD LFNRVVWQLA SRPDVEVYAW MPVLAFDMDP SLPRITRIDP KTGKTSIDPD QYRRLSPFNP EVRQRIIDIY RDMAYSAPID GIIYHDDAVM SDFEDASPDA IRAYEKAGFP GSITTIRQDP EMMQRWTRYK SKYLIDFTNE LTREVRDIRG PQVKSARNIF AMPILEPESE AWFAQNLDDF LANYDWVAPM AMPLMEKVPL SESNEWLAEL VNKVAQRPGA LEKTVFELQS KDWTQPEGNN AISGPILAGW MRQLQLSGAQ SFGYYPDNFI TGEPPLKDVR PVLSSAWYPL YDR
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