Gene YPK_2067 details

Gene Information

• Locus tag: YPK_2067
• Symbol: oppD
• ID: 6088296
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 2294049
• End bp: 2295050
• Gene Length: 1002 bp
• Protein Length: 333 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 641597134
• Product: oligopeptide transporter ATP-binding component
• Protein accession: YP_001720807
• Protein GI: 170024302
• COG category: [E] Amino acid transport and metabolism; [P] Inorganic ion transport and metabolism
• COG ID: [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.702331
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGACTA TCAATAATCA CTCTACTGTT CAGTCCTCTG TATTGTTGGA GGTTAAAGAT 
CTGACGGTGA CCTTCGGTAC ATCAGATGGT GATGTGACTG CGGTTAACGC ACTTAATTTT 
GCCCTGCGAG CGGGTGAGAC ACTTGGCATT GTAGGCGAAT CTGGCTCAGG AAAATCGCAG 
ACTGCCTTCG CTTTGATGGG GCTGTTGGCC AGTAATGGTC GGATAGGCGG CTCTGCGAAA 
TTTAATGGCC GTGAAATTCT TAATCTGCCA GAAAAACAAT TGAATCGTTT GCGGGCCGAA 
GAGATCGCTA TGATTTTCCA AGACCCAATG ACGTCGCTGA ACCCTTATAT GCGAGTGGGT 
GAGCAGTTAA TGGAAGTGCT GCAATTACAT AAGAAAATGA GTAAAAGCGA AGCATTTGAA 
GAGTCTATCC GTATGCTTGA TGCAGTAAAA ATGCCCGAAG CACGTAAACG TATGCGCATG 
TATCCACATG AATTTTCTGG GGGTATGCGT CAGCGGGTCA TGATTGCGAT GGCACTACTG 
TGCCGCCCTA AGTTATTGAT TGCTGACGAA CCGACAACGG CATTAGATGT TACTGTTCAG 
GCTCAAATCA TGACGTTGCT AAATGAACTT AAAAGAGAGT TCAACACCGC AATTATCATG 
ATCACCCATG ACTTGGGGGT CGTTGCAGGG ATTTGTGACA AAGTCTTAGT AATGTATGCG 
GGCCGAACAA TGGAATACGG CCAAGCACGC GATATTTTTT ATCATCCAAG CCACCCCTAT 
TCGATAGGTT TATTGAATGC CGTTCCTCGC CTTGATGCTG AAGGTGAATC TCTGATAACC 
ATACCGGGTA ATCCACCCAA TTTACTTCGC TTGCCCAAAG GGTGTCCATT CCAGCCTCGT 
TGCCAATATG CCATGGATCG TTGTTCAACG GCACCTGTGT TGGAACATTT TGGTGAAGGC 
CGCTTACGCG CCTGTTATAA GCCGGTAGGG GAATTAGTAT GA 

 

Protein sequence

MTTINNHSTV QSSVLLEVKD LTVTFGTSDG DVTAVNALNF ALRAGETLGI VGESGSGKSQ 
TAFALMGLLA SNGRIGGSAK FNGREILNLP EKQLNRLRAE EIAMIFQDPM TSLNPYMRVG 
EQLMEVLQLH KKMSKSEAFE ESIRMLDAVK MPEARKRMRM YPHEFSGGMR QRVMIAMALL 
CRPKLLIADE PTTALDVTVQ AQIMTLLNEL KREFNTAIIM ITHDLGVVAG ICDKVLVMYA 
GRTMEYGQAR DIFYHPSHPY SIGLLNAVPR LDAEGESLIT IPGNPPNLLR LPKGCPFQPR 
CQYAMDRCST APVLEHFGEG RLRACYKPVG ELV