| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2012 |
|---|
| Symbol | |
|---|
| ID | 6087736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 2240379 |
|---|
| End bp | 2241080 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641597079 |
|---|
| Product | electron transport complex RsxE subunit |
|---|
| Protein accession | YP_001720752 |
|---|
| Protein GI | 170024247 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4660] Predicted NADH:ubiquinone oxidoreductase, subunit RnfE |
|---|
| TIGRFAM ID | [TIGR01948] electron transport complex, RnfABCDGE type, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00017811 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAG CGAAAAAACT GTTAGCACAA GGGTTGTGGA AAAATAACTC TGCGCTGGTG
CAACTGTTGG GGCTCTGTCC ATTGTTGGCA GTCTCTTCCA CGGCAACCAA CGCATTGGGG
CTGGGGTTAG CGACCACGCT AGTCCTTGTG TGTACCAATA CCGCAGTTTC CGCATTGCGC
CGTTGGGTAC CGTCTGAAAT CCGTATTCCT ATTTATGTCA TGATTATTGC GTCGGTCGTC
AGTACCGTGC AAATGCTGAT CAACGCTTAT GCCTTTGGTT TATATCAATC ATTGGGGATA
TTTATCCCAT TGATTGTGAC CAACTGTATC GTGATTGGCC GGGCAGAGGC CTATGCAGCG
AAGAATCCGG TGGGGCTATC CGCATTGGAT GGTTTTGCCA TGGGGATGGG AGCAACCTGT
GCCTTATTTG TTTTAGGGGC ACTGCGCGAA ATTTTGGGTA ACGGTACCTT ATTTGACGGC
GCAGACATGT TGCTAGGCAG TTGGGCTACA GTACTGCGCA TTGACATCTT GCATTTAGAT
ACCCCTTTCC TGCTGGCGAT GTTGCCACCA GGTGCGTTTA TCGGCCTGGG TTTACTGCTG
GCCGGTAAAT ATGTCATTGA CGAGAAAATG AAAGCGCGCA AAGCCAATAC ACGGGTTAGC
GTACCGCAAC TTCAGGATGG AGATGCCGAG AAAGCCTTAT GA
|
|---|
| Protein sequence | MSEAKKLLAQ GLWKNNSALV QLLGLCPLLA VSSTATNALG LGLATTLVLV CTNTAVSALR
RWVPSEIRIP IYVMIIASVV STVQMLINAY AFGLYQSLGI FIPLIVTNCI VIGRAEAYAA
KNPVGLSALD GFAMGMGATC ALFVLGALRE ILGNGTLFDG ADMLLGSWAT VLRIDILHLD
TPFLLAMLPP GAFIGLGLLL AGKYVIDEKM KARKANTRVS VPQLQDGDAE KAL
|
|---|
| |