Gene YPK_1958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1958 
Symbol 
ID6087472 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp2176908 
End bp2177939 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content43% 
IMG OID641597027 
ProductABC transporter, periplasmic substrate-binding protein 
Protein accessionYP_001720700 
Protein GI170024195 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAAGT TTATATCAAC ATCAATAATA TCACTTGAAT TTTATAAAAC TTCATTAAAA 
AAATCATTCA TAGCAATATC TGCCTTACCA TTACTCATGT CCAGCATGGC ATGGGCACAG
CCAGATGTGG TAAGGCTTGG TAATTTAAAA TTCGCTCATT ATGGCGCTAT TTCATATATG
AAAGAGATAG CACCAAAATA TAACATAAAG ATAGAAGAAC GAATGTTTGC AAAGGGGATA
GATATTGCTC CCGCAATCGT CGCGGGGCAA ATTGATATAG CGGCCAGTGC AGTTGATGCG
GCAATCGCTG CCCGCGCTCA AAATATCCCC ATCTATGTTA TTGCCGGATT TGCCAAAGGC
GGTGCCCGAA TTGTTATTGG CAATAATAGC AGTATTAAAT CCGTTGCTGA TTTTAAAGGT
AAAAAAGTGG GGGTTGCCCG TGGTGGTGCT CAGGAACTTC TTCTTCTGGC AGAGTTGGAT
AAATATGGGC TGACATGGTC TGATCGGCCA GGAAAAGATG TTCAGATTAT TTATATGGCT
TATGCCGATC TTAATCAGGC TCTTCAGTCT GGTAATCTGG ATGCTATTAG CCAATCTGAA
CCGCATGCCA GCCAGGCAAT TAATATAGGG TATGGTGTCG AGTTGTTGAA GCCCTACGAT
ACCCCCGTAG GCGTTCCAAT TCGCGCGTTT ATCATGACGG AAGCCATGTA TAAAGAGAAG
CCAGAGGTGG CTGCTCGCGT ACTTAAACTG TTTGTTGACG CGACCAATAC CTTTATTCAA
CAACCTGAAA TAGCGGAAGA ATATGTCCGT AAAGAGATGT TCAAGAACCA AATTACCTCG
CAAGATTATC AAGATGCTAT TGGTAATTCC CCATTCAGTT ACGACATCAC GGTGGAACAT
GTTCAGGTGA CGACTGACTT AATGCGGAAA TATGGCATCG GCCGAATGAA TAATCCCCCC
GTTGCCGCTG ATTGGGTAAA GACTGATCTT CTTGAGGCTG CAAAGAAAAG CATTGGGGTT
AATGGGTCAT AA
 
Protein sequence
MIKFISTSII SLEFYKTSLK KSFIAISALP LLMSSMAWAQ PDVVRLGNLK FAHYGAISYM 
KEIAPKYNIK IEERMFAKGI DIAPAIVAGQ IDIAASAVDA AIAARAQNIP IYVIAGFAKG
GARIVIGNNS SIKSVADFKG KKVGVARGGA QELLLLAELD KYGLTWSDRP GKDVQIIYMA
YADLNQALQS GNLDAISQSE PHASQAINIG YGVELLKPYD TPVGVPIRAF IMTEAMYKEK
PEVAARVLKL FVDATNTFIQ QPEIAEEYVR KEMFKNQITS QDYQDAIGNS PFSYDITVEH
VQVTTDLMRK YGIGRMNNPP VAADWVKTDL LEAAKKSIGV NGS