Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1886 |
Symbol | tppB |
ID | 6089462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 2090946 |
End bp | 2092481 |
Gene Length | 1536 bp |
Protein Length | 511 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641596957 |
Product | putative tripeptide transporter permease |
Protein accession | YP_001720630 |
Protein GI | 170024125 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.348979 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCGGTA GTGAAAAATT AGAGGTCCCA GTGTCAACAG CAAACAACAA CCAACCAGAA AGCATCAGTA TGAACGCTTT CAAACAACCA AAAGCGTTTT ATCTTATTTT CTCTATAGAA CTTTGGGAGC GCTTTGGTTA CTACGGCCTG CAAGGGATCA TGGCTGTCTA CCTGGTAAAA ATGCTCGGGA TGAGCGAAGC CGATTCAATC ACCTTGTTCT CCTCATTCAG CGCCTTGGTG TATGGTTTTG TCGCCATTGG TGGCTGGTTA GGCGATAAAG TCCTTGGGGC GAAGCGGGTT ATTGTCCTTG GTGCACTCAC GCTAGCGGTC GGTTATTCCA TGATAGCCTA CTCCGGCCAC GAGATTTTCT GGGTTTATCT GGGCATGGCA ACCATTGCCG TTGGTAATGG CTTATTTAAA GCCAACCCTT CATCTCTACT TTCAACCTGC TACAGCAAGG ACGATCCGCG TTTGGACGGT GCATTTACCA TGTACTATAT GTCCATCAAT ATCGGTTCGT TCTTCTCTAT GTTGGCAACC CCATGGCTGG CGGCTAAATA TGGCTGGAGC GTTGCGTTTT CTCTGAGCGT TGTGGGGATG TTGATTACAC TGGTCAATTT CTGGTTCTGC CGTAAATGGG TAAAAAACCA AGGCTCCAAA CCAGACTTTC TCCCTCTGCA ATTTAAAAAA TTACTGATGG TCTTAGTGGG TATTATCGCG TTGATAACCC TTTCCAACTG GTTACTCCAC AACCAGATTA TTGCACGCTG GGCGCTGGCA CTGGTCTCCC TAGGGATTAT CTTCATCTTT ACCAAAGAAA CGCTCTTCTT GCAGGGCATT GCGCGCCGCA GAATGATTGT CGCCTTCTTG TTGATGCTGG AAGCGGTCAT TTTCTTTGTG CTATACAGCC AAATGCCAAC CTCACTGAAC TTCTTCGCTA TCCACAATGT GGAGCACTCA ATCTTTGGCA TTGGTTTTGA ACCAGAACAA TTTCAGGCAC TGAATCCCTT CTGGATCATG CTTGCCAGCC CTATTTTGGC GGCTATCTAT AATAAGATGG GCGACCGTCT ACCAATGCCG CATAAGTTTG CCTTTGGTAT GATGCTCTGC TCCGCTGCCT TCTTGGTGCT GCCATGGGGA GCAAGCTTTG CTAATGAACA CGGTATTGTG TCTGTTAACT GGCTTATCTT AAGTTATGCA CTGCAAAGTA TCGGTGAGTT GATGATCTCC GGCTTAGGTC TGGCCATGGT TGCTCAATTA GTACCTCAGC GTTTAATGGG CTTCATCATG GGGTCATGGT TCCTGACTAC CGCGGCCGCG GCTCTGATCG CGGGTAAAGT GGCCGCATTG ACTGCGGTCC CAAGTGATGC CATCACTGAC GCACATGCAT CCCTGGCGAT TTATAGCCAC GTATTTATGC AAATTGGTAT TGTGACCGCC ATTATCGCCG TACTGATGAT GCTGACTGCA CCGAAACTGT ATCGTATGAC GCTGGCCCCT AGCGATCACA ACGATGTCAA AATCATGACC CAATAA
|
Protein sequence | MTGSEKLEVP VSTANNNQPE SISMNAFKQP KAFYLIFSIE LWERFGYYGL QGIMAVYLVK MLGMSEADSI TLFSSFSALV YGFVAIGGWL GDKVLGAKRV IVLGALTLAV GYSMIAYSGH EIFWVYLGMA TIAVGNGLFK ANPSSLLSTC YSKDDPRLDG AFTMYYMSIN IGSFFSMLAT PWLAAKYGWS VAFSLSVVGM LITLVNFWFC RKWVKNQGSK PDFLPLQFKK LLMVLVGIIA LITLSNWLLH NQIIARWALA LVSLGIIFIF TKETLFLQGI ARRRMIVAFL LMLEAVIFFV LYSQMPTSLN FFAIHNVEHS IFGIGFEPEQ FQALNPFWIM LASPILAAIY NKMGDRLPMP HKFAFGMMLC SAAFLVLPWG ASFANEHGIV SVNWLILSYA LQSIGELMIS GLGLAMVAQL VPQRLMGFIM GSWFLTTAAA ALIAGKVAAL TAVPSDAITD AHASLAIYSH VFMQIGIVTA IIAVLMMLTA PKLYRMTLAP SDHNDVKIMT Q
|
| |