Gene YPK_1838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1838 
Symbol 
ID6087562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp2037516 
End bp2037980 
Gene Length465 bp 
Protein Length154 aa 
Translation table11 
GC content47% 
IMG OID641596906 
ProductNLP/P60 protein 
Protein accessionYP_001720582 
Protein GI170024077 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGACGC GCTTTTGGAT TTTTCTGATC AGTATGGTCC TTGCTGGTTG TAGCAGCCAT 
ACACCAACAC CCAGTGGATA CTTATCTGAC TCCATTGTGG TGGTCGCTAA ATTGAATGAG
CAGTTACGGC AATGGGAGGG AACGCCATAC CGTAACGGAG GGTTAGATCA ACGTGGTGTT
GATTGCTCTG GTTTTGTTTA CCGCACATTC CGTGATCGTT TTGATATGCA ACTCCCCCGA
ACGACCCTTG CGCAAACCAC CTTAGGCACT AAAGTCTCTC GTGATGAACT GATGCCTGGC
GATTTAGTCT TCTTCAAAAC GGGCAGTGGT CAGAATGGAT TACATGTTGG TATCTATGAT
ACCAATGATG AATTCATTCA TGCTTCAACC AGTAAAGGCG TCATTCGCTC GTCATTGGAG
AATGTGTACT GGAAACGAGT TTACTGGCAG GCACGGCGTA TTTGA
 
Protein sequence
MRTRFWIFLI SMVLAGCSSH TPTPSGYLSD SIVVVAKLNE QLRQWEGTPY RNGGLDQRGV 
DCSGFVYRTF RDRFDMQLPR TTLAQTTLGT KVSRDELMPG DLVFFKTGSG QNGLHVGIYD
TNDEFIHAST SKGVIRSSLE NVYWKRVYWQ ARRI