Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1645 |
Symbol | |
ID | 6089857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1825475 |
End bp | 1828762 |
Gene Length | 3288 bp |
Protein Length | 1095 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641596715 |
Product | CRISPR-associated helicase Cas3 family protein |
Protein accession | YP_001720391 |
Protein GI | 170023886 |
COG category | [R] General function prediction only |
COG ID | [COG1203] Predicted helicases |
TIGRFAM ID | [TIGR02562] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.103556 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATTT TACTGATATC CCAATGCCAT AAACGGGCGC TTGATGAAAC ACGCCGTATT TTGGATCAGT TTGCTGAACG TAAAGGTGAT CGGACATGGC AGACGGCAAT AACGCAGGAA GGGCTAAATA CATTACGTAA ATTATTGCGT AGAACGGCGC GGCGTAATAG TGCGGTGGCC TGCCATTGGA TCAAAAGTAA TAACCAAAGC GAGTTGCTAT GGATTGTTGG GAATTTAAGG CGTTTCAATG CTGAGGGAAC CGTGCCAACC AATACTACGC AACGGGATAT CTTGCGCAGC CAGGATGAAA ATAACTGGCA CAGCGTGGAG ACCATTGCAC TGCTGGCCGG TATCGCTGGG TTATTTCATG ATTTTGGTAA GGCCAATGTA CTATTTCAAC AAGGGTTGCA AGGGCAGGGG AAAACATATC AACCCTATCG GCATGAGTGG GTTTCATTAC GTTTATTTCA AGCTTTTGTT GAACAGAAAA ATGATATTCA ATGGCTCACA GCCTTAAGCC AAATTAATCC CGCTGACGAA ACCGCTTTAA TGTCCAATTT GGTTAAAGAT GGGCTAGACG ACTATACCAA TCCCCTCGCT GCATTACCTC CTCTTGCCAA GACTATCGCG TGGTTGATCC TTTCACACCA TCGCTTACCC GTGTATCCCT CCAAGGATTA CCATAGACCA CCTAAAGTAG AGGAAATCGA TGATTGGTTG CACCAGCAGC TTATGCCGGT ATGGAATTCG ACCAATATGG ACAGCGGTGA CTGGCGTGAA AAAGATAAGC TGGATGTATG GCGCTTCCCG CATGGCACGC CACTACAAAG TGCCGAATGG TGTAAAAAGG CACAAAAGTT TGCCAAACGC GCTTTGCGAC AACCGTCATT GGTTAATGAT GGTCACTTGA ACCAGCGTTT TACCAGCCAT ATGGCGCGTC TGGTGTTAAT GCTGGCCGAT CATCATTATT CTTCATTACC GGCCACTCCC GGTTGGCAGG ATAAAAACTA TCAAGTATTT GCAAATACCC ACAATAAAAT GAGGGATGCG AATGCCCACA GTAAAACGAT TGAAATGAAG CAGCGGCTGG ATGAACATAA TATTGGTGTG GGGCAGAACG CACTGTTGCT TGGCCGCAGC TTGCCACATA TCCGCAAAAC CTTACCAGCA ATCACTCGCC ATAAAGGATT TAAACAACGT TCGGTTCAGG AAAAGTATCG TTGGCAAGAT AAAGCCTTTG ATCTGGCTGT CACGCTGCGC GAGCGTTCTC TGCAGCAAGG TTTTTTCGGC GTCAATATGG CCTCAACCGG GTGCGGTAAA ACCTTTGCAA ATGCCCGGAT AATGTATGGT TTGTCCGATG AAAAACAGGG ATGCCGCTTT TCTGTTGCTT TGGGCCTACG CACCTTAACC TTGCAGACCG GTACCGCATT GCAGCAGAAG TTAACCTTAC AAAAGGACGA TTTGGCCGTC TTGATTGGTT CTCAATCGGT CTTGCAATTA TATCAATTAA ATAACGATAA ATTGGAACCT CGTGGAACCG GCAGTCAGTC GGCGGATAAG TTTTTTTCTG AGCATCAGTA TGTCAGTTAT GACGGCAGTT TGGATGATGG GCGGCTGAGC ACTTGGTTAA GTAATAACGA TAGATTAAAG CGTTTGCTCT GTGCGCCAGT ACTGGTCTGC ACCATTGACC ACCTGATCCC TGCCACCGAG AGCCTACGGG GTGGCAAGCA GATAGCCCCA ATGCTGCGTT TGCTAACCTC CGATTTAGTA TTGGATGAAC CGGATGATTT TGATCGCAAT GACTTGCCCG CGCTATGCCG CTTGGTGAAT TGGGCGGGCA TGTTAGGTTC CCGCGTTCTG CTTTCGTCAG CCACATTGCC GCCAGCATTA GTACAAGCGT TGTTCAATGC TTATCGTGCG GGGCGGGCTG ATTATCAACA AGCCAGCGGG CAACCGGATA CGCCGGTTAA TATTTGCTGT GCCTGGTTTG ATGAACATGG CGTTGCACAG CAAGATATCC AGCAGTCAAA AGATTTTATC CAACATCATG GCGATTTTAT CACTCGCCGA GTGGGGAAAC TGTCTACGGC AGAGGTGCTG CGCAGAGCCG AGTTAATTCC GGTCAGCTCT GCCAGTGTGA AGAATGGCTC GGTGCTAGAT GCTATGGCGG CGGTGATGCG CGATTCTATG CTGCGCTTAC ATCAGGCACA TCATCAAACT CACCCTTCTG AGAAAACCGT TTCAGTGGGT GTGGTCAGGA TGGCCAATAT TGATCCGCTG GTGGCGATTG CCCAGCGCTT ATACGCGATG GCCGCGCCAG AAAATTACCG TATTCATTAC TGTGTCTATC ATAGTCAGCA TCCGCTAGCG GTGCGTTCTG CTATTGAACG GCGGTTGGAT GTGACGTTAA CTCGCTATCA GCCTAATGCA CTTTGGCAGG TAGCCGAAAT TGAACATGCA CTACAGCACC ATCCGGAGCA GCATCACCTG TTTGTGGTGC TCGCCACCTC GGTGGTTGAA GTGGGCAGGG ACCATGACTA CGATTGGGCG CTAGCCGAAC CCAGCTCTAT GCGCTCGTTT ATCCAGTTGG CAGGGCGTGT ACAACGGCAC CGGCAAGTCG CGCCGCAGAT GGCGAATATG CATATTCTGC AAAAGAATTT TAAGGCACTG ACTCAAAAAG ATCCGGCGAT CCCCGTTTAT TGCAAACCCG GTTTTGAGAC CACCCGTTGT CGGCTGAACA CCCATGATCT GGATAAGCTG CTCTTACCCT CACAATATAA AGTGATTAAT GCCATCAGCC GTATTCAAGA AAGAACCAAA CTCGAACCTC GAGATAATTT TGTTGATTTA GAACATCTTA GCTTGAGGTT GATATTGCAG GGTAGCGCTG AACCGTTGAA GTATTATGCC GCATTATGGT GGCGTAAACA GGCGACCTGG AGTGGGGAGC AGCAACGGTG CACCCCTTTC CGACAATCCA GCCCTGATGA ACAGCATAAT CTGTGGATTG ACGATGAAGC GGATAAACCG GTGTTTAAAC GTCTTGATAG CGACCAGATT GAGTGGAAAG TCAGTGACGG GTTTCAGGAC GTTGAACTGA CACTGGCAGT AGGAAACAGT GCATGGATAG ACACCGATTG TCTGCGGATT TATCAGTGGC TGGCAGAGTC ATTAAATAAG GAATTAAACG AGGTTAGCCG GCAATTTGGT GAGGTCCGCC TGCCCAAAAA AGATGGCGAG AGGTGGCATT ATCATCCGCT ATTAGGGGGG TTTGGCGCAC TCGATTGA
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Protein sequence | MNILLISQCH KRALDETRRI LDQFAERKGD RTWQTAITQE GLNTLRKLLR RTARRNSAVA CHWIKSNNQS ELLWIVGNLR RFNAEGTVPT NTTQRDILRS QDENNWHSVE TIALLAGIAG LFHDFGKANV LFQQGLQGQG KTYQPYRHEW VSLRLFQAFV EQKNDIQWLT ALSQINPADE TALMSNLVKD GLDDYTNPLA ALPPLAKTIA WLILSHHRLP VYPSKDYHRP PKVEEIDDWL HQQLMPVWNS TNMDSGDWRE KDKLDVWRFP HGTPLQSAEW CKKAQKFAKR ALRQPSLVND GHLNQRFTSH MARLVLMLAD HHYSSLPATP GWQDKNYQVF ANTHNKMRDA NAHSKTIEMK QRLDEHNIGV GQNALLLGRS LPHIRKTLPA ITRHKGFKQR SVQEKYRWQD KAFDLAVTLR ERSLQQGFFG VNMASTGCGK TFANARIMYG LSDEKQGCRF SVALGLRTLT LQTGTALQQK LTLQKDDLAV LIGSQSVLQL YQLNNDKLEP RGTGSQSADK FFSEHQYVSY DGSLDDGRLS TWLSNNDRLK RLLCAPVLVC TIDHLIPATE SLRGGKQIAP MLRLLTSDLV LDEPDDFDRN DLPALCRLVN WAGMLGSRVL LSSATLPPAL VQALFNAYRA GRADYQQASG QPDTPVNICC AWFDEHGVAQ QDIQQSKDFI QHHGDFITRR VGKLSTAEVL RRAELIPVSS ASVKNGSVLD AMAAVMRDSM LRLHQAHHQT HPSEKTVSVG VVRMANIDPL VAIAQRLYAM AAPENYRIHY CVYHSQHPLA VRSAIERRLD VTLTRYQPNA LWQVAEIEHA LQHHPEQHHL FVVLATSVVE VGRDHDYDWA LAEPSSMRSF IQLAGRVQRH RQVAPQMANM HILQKNFKAL TQKDPAIPVY CKPGFETTRC RLNTHDLDKL LLPSQYKVIN AISRIQERTK LEPRDNFVDL EHLSLRLILQ GSAEPLKYYA ALWWRKQATW SGEQQRCTPF RQSSPDEQHN LWIDDEADKP VFKRLDSDQI EWKVSDGFQD VELTLAVGNS AWIDTDCLRI YQWLAESLNK ELNEVSRQFG EVRLPKKDGE RWHYHPLLGG FGALD
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