| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1540 |
|---|
| Symbol | |
|---|
| ID | 6089848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1702294 |
|---|
| End bp | 1703010 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641596610 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001720286 |
|---|
| Protein GI | 170023781 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4160] ABC-type arginine/histidine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAA TCTTACATCA ATATTGGCAG GCATTACTTT GGAGTGATGG CTACCGCTTT
ACCGGCATGG CGGTCACTCT CTGGTTATTA ATTTCTTCGG TCGTCATGGG GGGGTTACTG
GCGCTCCCAT TGGCGGTTGC TCGGGTGTCT GAACGGAGAT GGATCCGTTT ACCAGTATGG
ATTTTTACCT ATATCTTCCG TGGTACACCG CTGTATGTGC AGCTATTGGT GTTCTATTCC
GGAATGTATA GTTTGGAGAT AATCCGAGGC AATGACCTGC TCAATGCTTT TTTTCGCAGT
GGGTTAAATT GCACTATTTT AGCGCTGACG CTTAATACCT GTGCTTATAC CACTGAGATT
TTTGCCGGTG CGATCCGTTC GGTACCTCAT GGTGAAATAG AAGCAGCACG CGCCTATGGT
TTCTCACGTT TTAAATTATA CCGCTGCATT ATCTTACCTG CTGCATTGCG TATCTCTTTA
CCGGCATACA GCAATGAAGT GATCTTAATG CTGCACTCCA CCGCGCTGGC TTTTACCGCG
ACCGTACCCG ATATATTGAA AATAGCTCGC GATATTAACG CGGCGACTTA CCAACCCTTT
TATGCGTTCA GTATTGCCGC TGTACTTTAT TTGAGCATCT CCTTTACGCT AATTAGCCTG
TTCCGCCAGG CAGAAAAACG TTGGTTAGCC CATATTCAAC CTCAGGCATC GCATTAG
|
|---|
| Protein sequence | MIEILHQYWQ ALLWSDGYRF TGMAVTLWLL ISSVVMGGLL ALPLAVARVS ERRWIRLPVW
IFTYIFRGTP LYVQLLVFYS GMYSLEIIRG NDLLNAFFRS GLNCTILALT LNTCAYTTEI
FAGAIRSVPH GEIEAARAYG FSRFKLYRCI ILPAALRISL PAYSNEVILM LHSTALAFTA
TVPDILKIAR DINAATYQPF YAFSIAAVLY LSISFTLISL FRQAEKRWLA HIQPQASH
|
|---|
| |