Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1501 |
Symbol | |
ID | 6091110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1661522 |
End bp | 1663492 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641596571 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_001720247 |
Protein GI | 170023742 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.175478 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCCCTG AAATTGGCAG TTTTTTATTA TGTTTGGCGT TGGCGATTTC ACTGCTGCTG AGTCTGTATC CACAATGGGG AGCCGCGCGT CAGGATGCCC GTATGATGGC GGTTGGCAGG CCACTGACTT ATGGCATGTT TGCCGCGATC ACGTTGTCAT TTATCTGTCT GATATATGCA TTTGTGGTAA ATGATTTTAC CGTCTCCTAT GTCGCGGCGA ATTCCAACTC ATATTTGCCG ATTTATTACC GTATTGCCGC GAGTTGGGGA GCGCACGAAG GCTCCTTATT ATTATGGGTA TTGCTGCTCA GTTGTTGGTC ATTGGCGGTA GCGCTGTTTA GCCGTTCGAT GCCAGAGGAT GCGGTGGCGC GGGTGTTATC CGTGCTGGGA ATGATTACCG GCGGTTTTCT GCTATTTATT ATTCTGACGT CTAACCCGTT CTCTCGCACA TTACCTGATT TTCCTATTGA TGGCCGCGAT CTGAACCCGC TACTACAAGA TGTTGGGTTG ATTTTCCATC CCCCGCTGCT CTACATGGGG TATGTCGGTT TCTCCGTCGC GTTTGCTTTT GCAATTGCAT CATTAATGGC CGGTAGGCTC GACAGTGCCT GGGCGCGTTG GTCACGTCCA TGGACTCAGG CCGCATGGGT TTTCCTAACG CTTGGCATCG TACTTGGCTC AGCGTGGGCT TATTATGAAT TGGGGTGGGG CGGCTGGTGG TTCTGGGACC CGGTCGAAAA TGCCTCCTTT ATGCCGTGGC TGGCAGGTAC CGCACTGATT CACTCACTGG CTGTCACGGA GAAGCGCGGT ACTTTCAAAG CGTGGACGGT ATTGTTGGCG ATCACCGCGT TCTCCTTGTG TTTGATGGGG ACATTCTTAG TCCGCTCAGG CGTGCTGGTT TCGGTGCACT CCTTTGCCTC TGATCCGGCC CGTGGCATGT TTATTCTGGC CTATCTGGTG ATTGTGATTG GCGGTTCCCT GCTGCTGTAT GCGGTAAAAG GCGCGCAGGT GCGCAGCCGG ACTCAGCATG AAGTCTTTTC CCGCGAGACT TTCCTGCTCG GCAACAATGT GTTGCTTATT GCCGCAATGC TCGTGGTGTT GCTGGGAACA TTACTGCCAC TGGTTCACAA ACAGTTGGGA TTGGGCAGTA TCTCCATTGG TGAACCGTTC TTTAATACGA TGTTCACTTG GTTAATGGCT CCGATGGCAT TGCTCATGGG GATAGGGCCG CTCGTGCGTT GGCGTCGTGA TGAACCGAGC AAACTGTGGA AGCGGTTGAG TGTGGCTCTG GTGGTCACTC TGCTGTTATC GATATCCGTA CCGTGGCTGC TGCAAGATAG TGTTGCCGGT ATGACGGTCG TCGGGTTGAT GATGGCCATT TGGGTGATCA TCCTGACATT AATGGAATTG CACGAACGGG CCACCCATCG TTATGGCTTC TGGCGTGGGT TGACTCACCT TTCCCGTAGC CACTGGGGCA TGGTGTTGGG GCATCTCGGG GTGGCGGTTA CGGTAATTGG GATTGCGTTT AGCCAGAATT ACAGTGTCGA ACGCGATGTG CGCATGAAGG CCGGTGATAG TATCGATATC CATGATTATC ACTTCACTTT TCGCGATGTC CACGATATCA AAGGGCCTAA CTATACCGGC GGCGTTGGCA TTATTGATGT CACCCGTAAT GGTAAATTGG AGGCCACATT ACATGCAGAA AAACGCTATT ACAGTGTCGC CCGCTCAATG ATGACTGAAG CAGCCATTGA TGGGGGGCTG ACCCGCGATC TTTATGCCGC CTTGGGTGAA GAGCTGGGCG ATGGCTCATG GGCGGTCCGC TTGTATTACA AACCTTTTGT GCGTTGGATA TGGTTTGGCG GGATCTTTAT GGCCGTCGGC GGCATCTTCT GTATGCTCGA TCCGCGCTAT CGGATGAGTA AAAAGCTAAA ACGCGGTGCG ATACCGGAGG CAGAGTCATG A
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Protein sequence | MIPEIGSFLL CLALAISLLL SLYPQWGAAR QDARMMAVGR PLTYGMFAAI TLSFICLIYA FVVNDFTVSY VAANSNSYLP IYYRIAASWG AHEGSLLLWV LLLSCWSLAV ALFSRSMPED AVARVLSVLG MITGGFLLFI ILTSNPFSRT LPDFPIDGRD LNPLLQDVGL IFHPPLLYMG YVGFSVAFAF AIASLMAGRL DSAWARWSRP WTQAAWVFLT LGIVLGSAWA YYELGWGGWW FWDPVENASF MPWLAGTALI HSLAVTEKRG TFKAWTVLLA ITAFSLCLMG TFLVRSGVLV SVHSFASDPA RGMFILAYLV IVIGGSLLLY AVKGAQVRSR TQHEVFSRET FLLGNNVLLI AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMA PMALLMGIGP LVRWRRDEPS KLWKRLSVAL VVTLLLSISV PWLLQDSVAG MTVVGLMMAI WVIILTLMEL HERATHRYGF WRGLTHLSRS HWGMVLGHLG VAVTVIGIAF SQNYSVERDV RMKAGDSIDI HDYHFTFRDV HDIKGPNYTG GVGIIDVTRN GKLEATLHAE KRYYSVARSM MTEAAIDGGL TRDLYAALGE ELGDGSWAVR LYYKPFVRWI WFGGIFMAVG GIFCMLDPRY RMSKKLKRGA IPEAES
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