| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1252 |
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| Symbol | |
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| ID | 6089442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 1376113 |
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| End bp | 1377654 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641596320 |
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| Product | putative transglycosylase |
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| Protein accession | YP_001720003 |
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| Protein GI | 170023498 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.831517 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACTCC ACTGGGGATT TAACCATGTT GAATTTAGCT TTACCGCACA CACGAAGAGA
GCGTTTCCGA GAGATAACTA TTTGACACGC ATAAAATTAA GTTACTTTAC CATCGGTCTG
GTTGCTCTGC TTCTGGCGCT TGCGCTGTGG CCCAATATTC CTTGGCGTAA TGGGCAAGAG
GGCCAACTTG ACCAAATAAA AGCCCGTGGA GAACTGCGCG TCAGTACCAT CAGTTCTCCT
TTGATCTACT CTACCGAAAA GGATACCCCT TCCGGTTTTG ACTATGAGCT AGCAAAACGT
TTTGCTGACT ATCTGGGGGT TAAACTGGTT ATCATCCCCC ATCATAATAT TGACGATCTG
TTTGACGCAT TAGATAACGA TGACACCGAT CTGCTAGCCG CTGGGCTGAT TTATAACCGT
GAACGCCTCA ATCGGGCGCG GACTGGCCCT GCCTACTATT CTGTTTCTCA GCAATTGGTC
TACCGGCTGG GTTCGCCACG GCCTAAATCG TTCAGCGATC TGAAAGGTCA GGTGGTTGTG
GCCTCCGGTT CGGCCCATAT GACCACACTA AAACGGCTTA AGCAGACAAA ATATCCTGAA
CTCAATTGGA GTTCATCCGT CGATAAGTCC GGTAAAGAAT TACTGGAGCA AGTCGCGGAA
GGTAAGCTCG ACTATACCCT TGGCGATTCA GCCACCATTG CCCTGTTACA ACGTATTCAT
CCGCAATTGG CAGTCGCATT TGATGTCACC GATGAAGAGC CCGTCACCTG GTATTTTAAA
CAGAGTGATG ACGATAGCCT GTATGCGGCC ATGCTCGATT TCTACAGTGA GATGGTGGAA
GACGGTAGCC TCGCACGTCT GGAGGAGAAA TATCTGGGCC ATGTGGGGAG TTTTGACTAT
GTCGATACCA AAACTTTCCT GTCCGCTATC GATAATGTCC TGCCCTCTTA CCAGCACCTA
TTTGAAAAAC ATGCAGGGGA CATTGACTGG AAATTGCTGG CCGTGATTGC CTATCAAGAA
TCACATTGGA ACCCGCAAGC CACCTCCCCT ACTGGTGTTC GTGGCTTGAT GATGCTAACC
CGTGCGACCG CGGACGGGTT AGGGGTCAAG GATAGGGTTG ACCCTGAAGA AAGCATCAGA
GGCGGGGCTA TCTATTTGCA ACGGCTGATG AAAAAACTCC CTGAAACCAT CCCAGAAGAT
GAGCGCATCT GGTTTGCACT GGCTGCGTAT AATTTAGGCT ATGGTCATAT GCTGGATGCC
CGCCGTTTGA CTAAAAATCA GAACGGTAAC CCAGACAGTT GGGTTGATGT GAAAATGCGT
TTACCGATGC TAAGCCAAAA ACGCTACTAC CCAAGCACCA CTTACGGTTA TGCCCGTGGT
CATGAAGCCT ATAACTATGT CGAGAATATT CGCCGTTATC AGGTCAGTCT GGTGGGATAT
TTACAGGAAA AAGAGAAAAA AGCGGCTCAA CATGCCGCCA TTGAGGCGGA GCTGGGCAAA
AGCAACCCGG TTGTCGGCCC CGGTTGGTCA ATCGGTGACT AA
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| Protein sequence | MPLHWGFNHV EFSFTAHTKR AFPRDNYLTR IKLSYFTIGL VALLLALALW PNIPWRNGQE
GQLDQIKARG ELRVSTISSP LIYSTEKDTP SGFDYELAKR FADYLGVKLV IIPHHNIDDL
FDALDNDDTD LLAAGLIYNR ERLNRARTGP AYYSVSQQLV YRLGSPRPKS FSDLKGQVVV
ASGSAHMTTL KRLKQTKYPE LNWSSSVDKS GKELLEQVAE GKLDYTLGDS ATIALLQRIH
PQLAVAFDVT DEEPVTWYFK QSDDDSLYAA MLDFYSEMVE DGSLARLEEK YLGHVGSFDY
VDTKTFLSAI DNVLPSYQHL FEKHAGDIDW KLLAVIAYQE SHWNPQATSP TGVRGLMMLT
RATADGLGVK DRVDPEESIR GGAIYLQRLM KKLPETIPED ERIWFALAAY NLGYGHMLDA
RRLTKNQNGN PDSWVDVKMR LPMLSQKRYY PSTTYGYARG HEAYNYVENI RRYQVSLVGY
LQEKEKKAAQ HAAIEAELGK SNPVVGPGWS IGD
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