Gene YPK_1210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1210 
Symbol 
ID6089609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand- 
Start bp1341572 
End bp1342201 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content46% 
IMG OID641596278 
ProductXRE family transcriptional regulator 
Protein accessionYP_001719961 
Protein GI170023456 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACCA TCGGCCAAAG AATTAAAAGA TTCAGAGAAG AGTTGAGTAT TAGCCAGGCG 
GAATTAGCCC AAAGGTGCGG ATGGCTATCC CAATCCCGAA TAGGAAACTA CGAAACCGAC 
AGCCGTAAAG TGAGCGTAGA AGACGCTGTC GTACTGGCTA AGGCACTGAA TGTTAACCCT 
GGCGAATTAA TCCTAGGAAC ACCAGATAAC GCAAGTTTCA CAAGCGCGGG GGAAAGATAC 
CTTCCTTTAG TCAGCTACGT TCAGGCAGGA ACTTTCACCG AACCAGATAA TTTGCTTTCT 
GCGGAGGGTG CTAAAGGGCA CGTCATGTAC GACGGCCCGA TATCCGAAGT GGCCTTTGCT 
TTAAAGATAA AAGGCGACTC TATGGAGCCG GAATTTAAGG AAGGGGACAC CATCATAATA 
GACCCGATGG TAGCACCTCA CCCAGGGGAG TTCGTCATAG CTAAAAATGG GGATCATGAA 
GCAACATTCA AAAAATACCG TCTCAAAGCT AACGGTTCTT TCGAATTAGT GCCACTAAAT 
CCGGACTATC CAACAATTGA CTCCGATATA CAACCGGTAA AAATTATCGG AACTATGATA 
GAGCATCGTA TCCATCGCCG TAAAAGATAA
 
Protein sequence
METIGQRIKR FREELSISQA ELAQRCGWLS QSRIGNYETD SRKVSVEDAV VLAKALNVNP 
GELILGTPDN ASFTSAGERY LPLVSYVQAG TFTEPDNLLS AEGAKGHVMY DGPISEVAFA 
LKIKGDSMEP EFKEGDTIII DPMVAPHPGE FVIAKNGDHE ATFKKYRLKA NGSFELVPLN 
PDYPTIDSDI QPVKIIGTMI EHRIHRRKR