| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1169 |
|---|
| Symbol | |
|---|
| ID | 6090957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1307419 |
|---|
| End bp | 1308156 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641596237 |
|---|
| Product | LamB/YcsF family protein |
|---|
| Protein accession | YP_001719920 |
|---|
| Protein GI | 170023415 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000136688 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAATTG ATTTAAATGC TGATTTGGGT GAGGGCTGCG CCAATGATCA GGCGCTGCTG
CAATTGGTCA GTTCGGCCAA CATAGCCTGC GGTTTTCATG CAGGTGATGC GCAAACTATG
CGTCAATCGG TACGCTGGGC GTTGGAGTAT GGTGTGGCTA TTGGTGCACA TCCGAGCTTC
CCGGATCGGG AAAACTTTGG TCGCACTGCT ATGCAGCTAC CACCTGAGAC CGTCTATGCT
CAAGTGGTTT ATCAATTGGG CGCGCTTGCC GCCATCGTGC AGGTTGAAGG GGGGGTTATG
CAGCACGTAA AACCCCATGG CATGTTGTAT AACCAAGCGG CGGTCGATCC GTTATTGGCG
GATGCCATTG CTCAGGCGGT TAAGGCTGTG GATCCGTCAT TACGTCTGGT CGGGTTAGCC
GGGAGTGAGT TGATCCGCGC CGGTACCCGT GTGGGGTTAG TCACCCGGCA GGAAGTGTTT
GCTGATCGCC ACTATCAACC CGATGGCACG TTAGTTCCTC GCAGTCAGCC AGATGCTCTA
ATAGAAAGTG ACGAGTTAGC GCTGTCACAA ACTCTGGCTA TGGTGCAACA GCATCAGGTT
CAGGCCTGCG ATGGCAGTTG GGTACAGGTA CAAGCTGATA CGGTATGTGT TCATGGCGAT
GGCGTACAGG CATTAGCGTT TGCGCGTTGT TTACGAGACC GTTTTCAGCA GGAAGGCATC
AGCGTGATAG CGCAATAA
|
|---|
| Protein sequence | MKIDLNADLG EGCANDQALL QLVSSANIAC GFHAGDAQTM RQSVRWALEY GVAIGAHPSF
PDRENFGRTA MQLPPETVYA QVVYQLGALA AIVQVEGGVM QHVKPHGMLY NQAAVDPLLA
DAIAQAVKAV DPSLRLVGLA GSELIRAGTR VGLVTRQEVF ADRHYQPDGT LVPRSQPDAL
IESDELALSQ TLAMVQQHQV QACDGSWVQV QADTVCVHGD GVQALAFARC LRDRFQQEGI
SVIAQ
|
|---|
| |