Gene YPK_1063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1063 
SymboldapD 
ID6090717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1199169 
End bp1199993 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content49% 
IMG OID641596129 
Product2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 
Protein accessionYP_001719817 
Protein GI170023312 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2171] Tetrahydrodipicolinate N-succinyltransferase 
TIGRFAM ID[TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCAAC TACAAAACGT TATTGAAACC GCCTTCGAGC GCCGTGCTGA CATTACGCCA 
GCGAATGTAG ACACCGTAAC GCGCGAAGCG ATTACCCATG TGATCGATTT ACTGGACACC
GGCGCGCTGC GCGTCGCAGA AAAAATTGAT GGTCAGTGGG TGACGCATCA GTGGCTGAAA
AAAGCGGTAC TGCTTTCTTT CCGCATCAAT GACAATCAAG TAATGGAAGG CGCTGAAACC
CGTTACTATG ACAAAGTACC CATGAAATTC GCAGGCTATG ATGAAGCGCG TTTCCAACGT
GAAGGTTTCC GCGTTGTTCC ACCAGCAACC GTGCGTAAAG GCGCATTTAT TGCCCGCAAT
ACGGTGTTGA TGCCTTCCTA TGTCAATATT GGTGCTTTTG TTGATGAGGG CACTATGGTC
GATACTTGGG CCACCGTGGG TTCTTGCGCG CAAATCGGTA AAAACGTCCA TCTATCTGGT
GGCGTTGGTA TTGGCGGCGT CTTGGAGCCA CTGCAAGCGA ACCCAACCAT TATCGAAGAT
AACTGCTTCG TAGGCGCACG CTCAGAAGTG GTTGAAGGCG TTATCGTCGA AGAAGGTTCT
GTTATCTCCA TGGGCGTGTT TATCGGTCAA AGCACCCGTA TTTATGATCG TGAAACTGGC
GAAGTCCATT ATGGCCGAGT ACCAGCAGGT TCGGTTGTCG TCTCTGGCAA CTTGCCATCG
AAAGATGGCA GCTATAGCTT GTACTGCGCA GTTATCGTGA AAAAAGTTGA CGCGAAAACT
CGCAGTAAAG TCGGTATTAA TGAGTTATTA CGCACCATCG ACTAA
 
Protein sequence
MQQLQNVIET AFERRADITP ANVDTVTREA ITHVIDLLDT GALRVAEKID GQWVTHQWLK 
KAVLLSFRIN DNQVMEGAET RYYDKVPMKF AGYDEARFQR EGFRVVPPAT VRKGAFIARN
TVLMPSYVNI GAFVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIED
NCFVGARSEV VEGVIVEEGS VISMGVFIGQ STRIYDRETG EVHYGRVPAG SVVVSGNLPS
KDGSYSLYCA VIVKKVDAKT RSKVGINELL RTID