| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_0924 |
|---|
| Symbol | lysS |
|---|
| ID | 6090296 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1042954 |
|---|
| End bp | 1044471 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641595986 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001719678 |
|---|
| Protein GI | 170023173 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAGC AAAAACCACA AGTCGCTGAG CAAGCGCAAG AACTCAATAG TGAGTTACAA
GCCCGTCGAG AAAAACTGGC TGTCTTACGG GGAAAGGGAA TTGCATTCCC TAATGATTTC
CGCCGTGAGA ACCTTTCCGA CCAGTTGCAT GCCGAGTTTG ACAGTAAAGA GAATGAAGAG
TTAGAAGCAC TGAATATCGA CGTAACCGTT GCTGGCCGTA TGATGACCCG CCGTATCATG
GGTAAAGCAT CATTTGTGAC TCTGCAAGAT GTTGGTGGCC GTATCCAGTT GTACGTTTCC
CGTGATGACC TACCGGAAGG CGTTTATAAC GAAGAATTCA AAAAGTGGGA CCTGGGCGAT
ATCCTGGGTG CGCGCGGTAA ACTGTTTAAA ACCAAAACCG GTGAGCTGTC GATCCACTGT
AGCGAACTGC GTCTGTTGAC CAAGGCTCTG CGTCCATTGC CAGATAAATT CCATGGCTTA
GCTGACCAGG AAACCCGTTA CCGCCAGCGT TATTTGGATC TGATTGCTAA CGACGAGTCT
CGTCATACTT TCAAAGTCCG TTCGCAAGTG ATGTCCGGTA TCCGTAGCTT CATGGTTGAA
AAAGGCTTCA TGGAAGTCGA AACGCCAATG ATGCAAGTGA TCCCTGGCGG CGCTTCCGCA
CGTCCGTTTG TCACGCATCA CAATGCGTTG GATATCGATA TGTATTTGCG TATCGCGCCA
GAGCTGTATC TGAAACGTCT GGTCGTGGGG GGCTTCGAAC GTGTGTTCGA AATCAACCGT
AACTTCCGCA ACGAAGGGGT TTCGCCACGT CATAACCCAG AGTTCACCAT GATGGAACTC
TATATGGCTT ATGCGGACTA TAAAGACCTG ATCGTCTTGA CGGAAGAGCT ATTCCGCACT
CTGACCGAAA CCATATTGGG GAGCAGTGTG GTGCAATATG GCGAACAGAC TTTTGATTTC
GGTAAGCCTT TTGCCAAATT GACCATGAAA GAAGCTATTT GTAAATATCG TCCTGAAACC
AATGTCGCGG ATTTAGACGA TATGGATAAA GCCGTCGCAA TTGCCGAATC ATTGGGTATC
AAGGTTGAGA AGAGCTGGGG CCTGGGTCGT ATTCAATGTG AAATCTTTGA AGAGACCGCA
GAAAGTCATC TTATCCAGCC AACGTTCATC ACAGAATATC CAGCCGAGGT TTCTCCGCTA
GCACGCCGTA ATGACGATAA TCCATTTATC ACTGACCGCT TTGAATTCTT CATCGGTGGC
CGTGAAATTG GTAATGGCTT CTCTGAGTTG AACGATGCCG AAGACCAGGC GCAGCGTTTC
GCCGATCAGG TAAGTGCTAA AGAAGCTGGC GATGATGAAG CGATGTTCTA CGATGAAGAC
TATATCACTG CATTGGAACA TGGCTTACCA CCAACCGCAG GGCTAGGTAT TGGTATTGAC
CGTATGGTTA TGTTGTTTAC CAATAGCCAT ACCATCCGTG ATGTCATTTT ATTCCCAGCG
ATGCGCCCGG TAAAATAA
|
|---|
| Protein sequence | MSEQKPQVAE QAQELNSELQ ARREKLAVLR GKGIAFPNDF RRENLSDQLH AEFDSKENEE
LEALNIDVTV AGRMMTRRIM GKASFVTLQD VGGRIQLYVS RDDLPEGVYN EEFKKWDLGD
ILGARGKLFK TKTGELSIHC SELRLLTKAL RPLPDKFHGL ADQETRYRQR YLDLIANDES
RHTFKVRSQV MSGIRSFMVE KGFMEVETPM MQVIPGGASA RPFVTHHNAL DIDMYLRIAP
ELYLKRLVVG GFERVFEINR NFRNEGVSPR HNPEFTMMEL YMAYADYKDL IVLTEELFRT
LTETILGSSV VQYGEQTFDF GKPFAKLTMK EAICKYRPET NVADLDDMDK AVAIAESLGI
KVEKSWGLGR IQCEIFEETA ESHLIQPTFI TEYPAEVSPL ARRNDDNPFI TDRFEFFIGG
REIGNGFSEL NDAEDQAQRF ADQVSAKEAG DDEAMFYDED YITALEHGLP PTAGLGIGID
RMVMLFTNSH TIRDVILFPA MRPVK
|
|---|
| |