Gene YPK_0920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_0920 
SymbolxerD 
ID6090117 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1038281 
End bp1039180 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content50% 
IMG OID641595982 
Productsite-specific tyrosine recombinase XerD 
Protein accessionYP_001719674 
Protein GI170023169 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAGC AAGATAACCC GCTGATTGAA CAATTTCTTG ATGCTCTGTG GCTGGAACGA 
AATCTGGCAG AGAATACACT GGCGTCATAC CGTTTGGATT TACATGCGCT GGTTGGATGG
TTGACACACC ATAACAGTGA TTTATTGCGC GCCAGCCCGC AGGACTTGCA ATCCTTCCTT
GCTGAACGGA TCGAGGGTGG CTATAAAGCC ACCAGCTCGG CTCGTTTACT CAGTGCGATG
CGCCGGTTAT TTCAATATTT ATACCGGGAG AAACTGCGTG AGGATGATCC GACTGCGCTG
CTCTCTTCAC CCAAATTACC GCAGCGCTTG CCGAAGGATT TAAGTGAGGC ACAGGTCGAT
GCGTTACTTA ACTCGCCCAA TGTGGACATT CCCTTGGAAC TGCGCGATAA AGCAATGCTG
GAAGTGCTCT ATGCCACCGG CTTGCGGGTG TCAGAATTGG TCGGGCTGAC CATCAGTGAT
GTTAGTCTAC GCCAAGGTGT GGTGAGAGTG ATTGGTAAAG GGAATAAAGA GCGCTTGGTC
CCCTTGGGGG AAGAAGCTGT GTATTGGATT GAGAACTATA TGGAGCATGG CCGGCCTTGG
TTGGTTAATG GCGCATCGCT GGATGTATTG TTCCCCAGTA ACCGTAGCCA GCAAATGACC
CGTCAGACTT TCTGGCATCG CATCAAACAC TATGCGATCC TTGCCGGTAT TGATAGTGAA
CGGCTTTCAC CCCATGTGCT ACGCCATGCC TTTGCCACGC ATCTGCTGAA TCACGGTGCC
GATTTACGTG TAGTGCAAAT GTTACTGGGC CACAGTGATC TGTCGACAAC TCAGATTTAT
ACGCATGTAG CGACTGAACG TTTGAGACAG CTACATCAAC AGCATCATCC ACGCGCTTAA
 
Protein sequence
MKQQDNPLIE QFLDALWLER NLAENTLASY RLDLHALVGW LTHHNSDLLR ASPQDLQSFL 
AERIEGGYKA TSSARLLSAM RRLFQYLYRE KLREDDPTAL LSSPKLPQRL PKDLSEAQVD
ALLNSPNVDI PLELRDKAML EVLYATGLRV SELVGLTISD VSLRQGVVRV IGKGNKERLV
PLGEEAVYWI ENYMEHGRPW LVNGASLDVL FPSNRSQQMT RQTFWHRIKH YAILAGIDSE
RLSPHVLRHA FATHLLNHGA DLRVVQMLLG HSDLSTTQIY THVATERLRQ LHQQHHPRA