Gene YPK_0464 details

Gene Information

• Locus tag: YPK_0464
• ID: 6091320
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 504783
• End bp: 506699
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641595526
• Product: regulatory protein CsrD
• Protein accession: YP_001719220
• Protein GI: 170022715
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.01356
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGATTTA CCACCAAACT TTCTGCGTTT ATGACGCTGC TGGTCGTATT GGCTATGTGT 
TTAGTCTTAT TGGGCAGCAC GATCAGCTTC TTCTATTTGT GCCAGAAGAA AATGGAACAA 
CGGCTCCAAA GTATTGTGAC CGCTTACGAT CAGTCACTGC TGCTGCAACC CATCAATAAA 
AAACGTGAAT GGCTGCCACT GATGATGCAG ACCCTTGGTG TGGTCGATGT CAGTGTCAAA 
AATAGCACCA GTACCCTCTA TCAACTCCAC ATTCCTGCAG TTTATACGCC TTGGAACAGC 
AACAGTCGTT ACCGTCAGAT GGTATTGCCT CTGTTGCATC AGCCAGGGGC GGAGATGCAT 
TTCAACTATA TTGACCCGTT GGGCAGCTAT GCCCGTTCTA TTTATGCCGC GGCCATTTTA 
TCGCTGGTGG TGGTGGTCAT TGCGTTAACG TTGTTGTTGA GTTTTCGCTG GCTACGTGAC 
CAGACGGTGG GGCAGGAAAA ACTTGAACGG CGAGCAAGGC GCATTCTCAA TGGTGAACGT 
GAACATGCGG TGCGCAGCGA GGATTACGAA TGGCCACCTT GTGCCAGCAG GGCTATTGAC 
CATTTATTAT CTGAGTTGAT GGAGGTGCGG GCAGAACGCA ATCGGGTAGA TACGTTAATC 
CGCACGTTTG CGGCTCAAGA TGCTCAGACT GGCCTCAGTA ACCGTCAGTT TTTTGATAAC 
CAACTGACCA CACAACTTGA AGAGACCGGC GCGCACGGCG TGGTCATGAT GGTGCAACTG 
CCCGATTTTG AAGCCTTAAA TGAAACGCAT GATCAGCAGC AAGTACAGGA ATTGATGAGT 
TCACTGGTTA ACCTGCTGTC AACTTTTGTG GCCCGCTACC CCTCAGCACT CTTGGCCCGC 
TACCTTAATA GTGACATCGC GATATTACTG CCCCACAAAA CCCTGAAAGA TGCCGATGTG 
ATGGCCGCAC AGTTGGTGAA TGCGGTGAGA ACCTTACCGG AGCCTCATAT TATTGATCGC 
GAATCACTGT TGCATATTGG CATCGTGGCT TACCGGAGTG GTGAGTCAGT CGAACAAATT 
ATGGACAATG CTGGGCAGGC GACCAAAAGT GCGGCGCTGT ATGGTGGCAA CGGTTGGTAT 
GTGTTCGACA CTCAGGTACC AGAGCGCGGG CGTGGCAGTG TTAAATGGCG CACATTACTG 
GAACAGACTC TGGCGAGCGG AGGCCCAAGG CTTTATCAAA AACCCGTTAT TACTGTTGAT 
GGCAAAATAA GCCATCGTGA AATAATTAGC CGCATATATG ATGGTGAGCA GGAGCTACTG 
GCGGCCGAGT TTATGCCCTT GGTACAATTG CTCGGATTGG GTGAACGTTA TGATCGGCAA 
AAGATTGATA AGATAATTCC TTTATTATCT TTATGGCCGG ATGAAACGCT GGCATTTTCT 
ATCAGCGTTG ATTCATTATT ACATCGTCCT TTCCAGCGCT GGTTGCGTGA CACGCTATTA 
CAGTGCAAAA AATCTGACCG AATGCGAATT ATCTTTGAAC TTGCAGAGGC AGATGTGTGT 
CAACATATCG AAGAAATCCG CCAAATGGTC CGTTTATTGC GTGGCGTAGG CTGCAAAGTG 
ATGGCATCAC AGGCTGGATT GACGGTTGTC AGCACCTCGT ATATTAAGTC TTTGCAGGTT 
GAAATGATAA AGCTTCATCC CGGTGTGGTA AGAAGCATTA ATTTTCGCTA TGAAAACCAG 
TTATTTGTAG AAAGTCTGAC CGGTGCCTGT GCAGGGACGC AGACGAAAGT TTTTGCGGCA 
GAAGTGCGTA CCCGTGAAGA ATGGCAAACG CTGCAAGAGA AAGGCGTTTA CGGCGGACAG 
GGCAATTTCT TTGCTCCACC GACCCCATTA AACTCCGGAA AGAAAAAATA TTCGTAA 

 

Protein sequence

MRFTTKLSAF MTLLVVLAMC LVLLGSTISF FYLCQKKMEQ RLQSIVTAYD QSLLLQPINK 
KREWLPLMMQ TLGVVDVSVK NSTSTLYQLH IPAVYTPWNS NSRYRQMVLP LLHQPGAEMH 
FNYIDPLGSY ARSIYAAAIL SLVVVVIALT LLLSFRWLRD QTVGQEKLER RARRILNGER 
EHAVRSEDYE WPPCASRAID HLLSELMEVR AERNRVDTLI RTFAAQDAQT GLSNRQFFDN 
QLTTQLEETG AHGVVMMVQL PDFEALNETH DQQQVQELMS SLVNLLSTFV ARYPSALLAR 
YLNSDIAILL PHKTLKDADV MAAQLVNAVR TLPEPHIIDR ESLLHIGIVA YRSGESVEQI 
MDNAGQATKS AALYGGNGWY VFDTQVPERG RGSVKWRTLL EQTLASGGPR LYQKPVITVD 
GKISHREIIS RIYDGEQELL AAEFMPLVQL LGLGERYDRQ KIDKIIPLLS LWPDETLAFS 
ISVDSLLHRP FQRWLRDTLL QCKKSDRMRI IFELAEADVC QHIEEIRQMV RLLRGVGCKV 
MASQAGLTVV STSYIKSLQV EMIKLHPGVV RSINFRYENQ LFVESLTGAC AGTQTKVFAA 
EVRTREEWQT LQEKGVYGGQ GNFFAPPTPL NSGKKKYS